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Table 1 List of top 20 abundant transcripts in S. elongatus UTEX 2973

From: The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973

Gene/sRNA Type Strand Position Product Log2-Fold change Max conditiona
DK/CT HL/CT HT/CT
M744_RS11628 gTSS 2,349,022 Hypothetical protein 7.30 − 2.48 3.80 DK
Sye_sRNA3 nTSS + 1,471,309 ncRNA 4.62 − 5.21 1.27 DK
hspA gTSS + 788,507 Molecular chaperone 6.91 − 0.30 − 0.23 DK
ssrA nTSS + 2,274,728 tmRNA 4.03 − 0.21 − 0.06 DK
psaA gTSS + 1,138,200 Photosystem I P700 chlorophyll a apoprotein A1 − 0.62 − 2.23 0.09 HT
Sye_sRNA1 nTSS + 1,559,116 sRNA 1.35 − 1.42 − 0.08 DK
gifA gTSS + 2,354,845 Glutamine synthetase inactivating factor IF7 6.41 − 1.82 − 0.68 DK
psbI gTSS 1,491,583 Photosystem II reaction center protein I − 1.56 0.58 0.68 HT
rpl10 gTSS + 2,633,453 50S ribosomal protein L10 − 1.86 3.67 − 0.67 HL
rps21 gTSS 1,425,136 30S ribosomal protein S21 − 2.55 2.71 − 0.32 HL
psbE gTSS + 2,054,473 Cytochrome b559 subunit alpha − 0.21 − 0.03 − 0.09 HT
sphX gTSS + 741,520 Protein SphX − 4.07 2.01 − 1.15 HL
cp12 gTSS + 319,690 Hypothetical protein 6.90 − 0.00 − 0.17 DK
rbp1 gTSS 2,585,082 RNA-binding protein 4.24 3.26 − 0.14 DK
M744_RS12900 gTSS + 2,605,244 Hypothetical protein 4.47 − 2.25 0.59 DK
gltB gTSS 2,367,947 Glutamate synthase subunit alpha (ferredoxin-GOGAT, Fd-GOGAT) 0.80 0.19 − 0.63 DK
M744_RS00180 gTSS 34,832 Hypothetical protein − 2.95 − 3.64 − 0.25 CT
M744_RS05545 gTSS + 1,062,162 Ribonuclease III 2.53 2.63 − 0.15 DK
somA gTSS + 1,561,830 Porin 0.05 2.63 − 0.52 HL
PsrR1 nTSS + 11,213 sRNA − 1.98 5.79 − 3.92 HL
  1. All transcripts (except for rRNA) were sorted according to their normalized read counts
  2. aThe culture conditions under which the level of each transcript reached its maximum