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TableĀ 1 Pathway analysis of differentially expressed genes (DEGs) in kpG_48-vs-kpC_48

From: Improved xylose tolerance and 2,3-butanediol production of Klebsiella pneumoniae by directed evolution of rpoD and the mechanisms revealed by transcriptomics

Pathway DEGs numbers All-unigene numbers P value Q value Pathway ID
Purine metabolism 23 (5.08%) 96 (24.73%) 0.00 0.31 ko00230
Lysine biosynthesis 8 (1.77%) 23 (34.78%) 0.01 0.31 ko00300
Lipopolysaccharide biosynthesis 7 (1.55%) 19 (36.84%) 0.01 0.31 ko00540
d-Alanine metabolism 2 (0.44%) 2 (100%) 0.02 0.46 ko00473
Flagellar assembly 5 (1.1%) 13 (38.46%) 0.02 0.46 ko02040
Pyrimidine metabolism 11 (2.43%) 46 (23.91%) 0.03 0.55 ko00240
Ubiquinone and other terpenoid-quinone biosynthesis 10 (0.95%) 12 (83.33%) 0.00 0.02 ko00130
Two-component system 78 (7.4%) 193 (40.41%) 0.00 0.05 ko02020
Pantothenate and CoA biosynthesis 16 (0.87%) 17 (94.12%) 0.00 0.03 ko00770
Fatty acid biosynthesis 10 (1.69%) 29 (34.48%) 0.02 0.86 ko00061
Biosynthesis of secondary metabolites 55 (17.86%) 463 (35.95%) 0.02 0.20 ko01110
Nicotinate and nicotinamide metabolism 5 (1.62%) 17 (29.41%) 0.01 0.20 ko00760
Phosphatidylinositol signaling system 6 (1.19%) 16 (37.5%) 0.02 0.26 ko04070
Oxidative phosphorylation 48 (9.52%) 104 (47.12%) 0.00 0.00 ko00190
Phosphotransferase system (PTS) 8 (3.96%) 68 (11.76%) 0.05 0.47 ko02060