Table 1 Pathway analysis of differentially expressed genes (DEGs) in kpG_48-vs-kpC_48
Pathway | DEGs numbers | All-unigene numbers | P value | Q value | Pathway ID |
|---|---|---|---|---|---|
Purine metabolism | 23 (5.08%) | 96 (24.73%) | 0.00 | 0.31 | ko00230 |
Lysine biosynthesis | 8 (1.77%) | 23 (34.78%) | 0.01 | 0.31 | ko00300 |
Lipopolysaccharide biosynthesis | 7 (1.55%) | 19 (36.84%) | 0.01 | 0.31 | ko00540 |
d-Alanine metabolism | 2 (0.44%) | 2 (100%) | 0.02 | 0.46 | ko00473 |
Flagellar assembly | 5 (1.1%) | 13 (38.46%) | 0.02 | 0.46 | ko02040 |
Pyrimidine metabolism | 11 (2.43%) | 46 (23.91%) | 0.03 | 0.55 | ko00240 |
Ubiquinone and other terpenoid-quinone biosynthesis | 10 (0.95%) | 12 (83.33%) | 0.00 | 0.02 | ko00130 |
Two-component system | 78 (7.4%) | 193 (40.41%) | 0.00 | 0.05 | ko02020 |
Pantothenate and CoA biosynthesis | 16 (0.87%) | 17 (94.12%) | 0.00 | 0.03 | ko00770 |
Fatty acid biosynthesis | 10 (1.69%) | 29 (34.48%) | 0.02 | 0.86 | ko00061 |
Biosynthesis of secondary metabolites | 55 (17.86%) | 463 (35.95%) | 0.02 | 0.20 | ko01110 |
Nicotinate and nicotinamide metabolism | 5 (1.62%) | 17 (29.41%) | 0.01 | 0.20 | ko00760 |
Phosphatidylinositol signaling system | 6 (1.19%) | 16 (37.5%) | 0.02 | 0.26 | ko04070 |
Oxidative phosphorylation | 48 (9.52%) | 104 (47.12%) | 0.00 | 0.00 | ko00190 |
Phosphotransferase system (PTS) | 8 (3.96%) | 68 (11.76%) | 0.05 | 0.47 | ko02060 |