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Table 2 Putative enzyme’s genes of strain SP-35 involving in lignin degradation and catabolic

From: Genomics and biochemistry investigation on the metabolic pathway of milled wood and alkali lignin-derived aromatic metabolites of Comamonas serinivorans SP-35

No Encode protein Orf-name KO/Gene_ID
1 Dyp-type peroxidase orf02723_1 K07223
2 Alkylhydroperoxidase orf01844_1, orf01464_1, orf00109_1, orf01615_1  
3 Glutathione peroxidase orf01521_1 K00432
4 Laccase orf02918_1 K05810
5 Cytochrome P450 orf00617_1, orf01862_1, orf00094_1  
6 Superoxide dismutase orf00200_1, orf01398_1, orf02451_1 K04565, K04564
7 Benzoate 1,2-dioxygenase orf01595_1, orf01596_1 K05549, K05550
8 1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase orf01598_1 K05783
9 Catechol 1,2-dioxygenase (CatA) orf01594_1 K03381
10 Muconate cycloisomerase (CatB) orf01593_1 K01856
12 2,4′-Dihydroxyacetophenone dioxygenase orf00887_1  
13 4-Hydroxybenzoate polyprenyltransferase orf04164_1 K03179
14 Phenylacetate-CoA ligase (paaK) orf02154_1 K01912
15 1,2-Epoxyphenylacetyl-CoA isomerase (paaG) orf00429_1, orf01010_1, orf00301_1, orf01175_1, orf03337_1 K15866
16 3-Oxoadipyl-CoA thiolase (paaJ) orf01279_1  
17 3-Hydroxyadipyl-CoA dehydrogenase (paaH) orf01817_1  
18 4-Coumarate–CoA ligase orf00090_1, orf00074_1, orf04303_1, orf00300_1 K00666
19 p-Hydroxyphenylacetate 3-hydroxylase orf00203_1  
20 R)-Benzylsuccinyl-CoA dehydrogenase orf03060_1 K00249
21 Hydroxycinnamoyl-CoA hydratase-lyase orf03793_1 K15866
22 Vanillate O-demethylase oxidoreductase orf00093_1, orf01861_1  
23 4-Hydroxybenzoyl-CoA thioesterase orf02427_1, orf03445_1 K07107
24 Aldehyde dehydrogenase orf01894_1, orf02026_1, orf01760_1, orf00092_1 K00128
25 Alcohol dehydrogenase orf02362_1, orf01315_1, orf00315_1  
26 p-Hydroxybenzoate hydroxylase/Baeyer–Villiger monooxygenase orf01314_1  
27 Muconolactone d-isomerase (CatC) orf01601_1 K03464
28 3-Oxoadipate CoA-transferase subunit A (pcaI) orf01277_1 K01031
29 3-Oxoadipate CoA-transferase subunit B (pcaJ) orf01278_1 K01032
30 Carboxymuconolactone decarboxylase (pcaC) orf00668_1, orf02483_1 K01607
31 Beta-ketoadipate enol-lactone hydrolase (pcaD) orf01600_1, orf01280_1 K01055
32 Beta-ketoadipyl CoA thiolase (pcaF) orf02814_1, orf01237_1, orf01537_1, orf02199_1  
33 Glutathione S-transferase orf00149_1, orf03152_1, orf01651_1, orf01341_1, orf03018_1, orf01342_1, orf02126_1, orf02328_1, orf01306_1, orf00150_1, orf00388_1, orf02845_1, orf00142_1, orf03308_1,orf03594_1, orf01202_1  
34 NAD-dependent alcohol dehydrogenase orf01643_1, orf03396_1  
35 Beta-ketoadipate pathway transcription regulator orf01276_1, orf00869_1  
36 Gentisate transporter orf03503_1 K05548
37 Benzoate transporter orf00892_1, orf01603_1, orf00360_1, orf03205_1, orf01599_1 K05782
38 Alpha-ketoglutarate transporter (benE) orf01819_1 K03761
39 Benzoate anaerobic degradation regulator orf04233_1