Fig. 5

Transcriptome profiling of ∆POX01907 and the parental strain ∆PoxKu70 during growth in the presence of soluble corn starch as the carbon source. a Kyoto encyclopedia of genes and genomes annotation of proteins encoded by differentially expressed genes (DEGs) in ∆POX01907 relative to ∆PoxKu70. DEGs were identified according to a |log₂ fold change| ≥ 1 and a P ≤ 0.05 as thresholds. b DEGs involved in glycolysis/gluconeogenesis and the TCA cycle. Upregulated DEGs are labeled in red, and downregulated DEGs are labeled in blue. c POX01907-specific regulation of DEGs encoding carbohydrate-active enzymes (CAZymes). Upregulated DEGs are labeled in pink, and downregulated DEGs are labeled in blue. Solid triangles represent DEGs encoding plant-cell-wall-degrading enzymes, and solid pentagrams represent DEGs encoding amylases. d Heatmap showing transcription levels of DEGs encoding putative transcription factors