Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)

Table 1 Summary of GH30 CUPP groups in relation to CAZy subfamilies and EC functions

GH30 Rep. members	CAZy classification			CUPP group	Number of peptides	Unique peptides	Taxonomy				Additional classification
GH30 Rep. members	Subfamily	Current	New	CUPP group	Number of peptides	Unique peptides	Classes	B	E	F	PDB	Function	Amount
11	GH30_1	20		GH30:1	2854	2488	4		X		24	3.2.1.45	2
9	GH30_1	20		GH30:2	4894	4098	6	X			1
92	GH30_1	136		GH30:3	3349	2444	14	X	X
29	GH30_1	33		GH30:4	11,750	11,306	4	X
8	GH30_1	8		GH30:5	7182	6759	2		X
45	GH30_2	101		GH30:6	1680	1450	11	X				3.2.1.37	3
5	GH30_2	9		GH30:7	7731	7571	1	X
7	GH30_2	7		GH30:8	5334	4911	3	X
22	GH30_3	35		GH30:9	7643	7007	4	X			2	3.2.1.75	1
8	GH30_3	12		GH30:10	12,014	11,253	3			X		3.2.1.75	4
85	GH30_3	90		GH30:11	3855	2991	10	X				3.2.1.75	1
30	GH30_3	54		GH30:12	9297	8260	1	X
39	GH30_3	48		GH30:13	3279	1974	6	X
31	GH30_3	45		GH30:14	1456	693	12	X				3.2.1.31	0
8	GH30_3	47	1	GH30:15	11,665	10,896	3	X
8	GH30_3	15		GH30:16	8689	7905	3	X
6	GH30_3	6		GH30:17	12,575	11,617	1	X
5	GH30_3	2	8	GH30:18	8231	7565	2	X
56	GH30_4	50	6	GH30:19	1331	892	10	X
8	GH30_4	13		GH30:20	16,756	16,118	2	X				3.2.1.38	1
26	GH30_5	34		GH30:21	7515	7169	8	X		X		3.2.1.164	3
43	GH30_5	65		GH30:22	4914	4545	3	X
12	GH30_5	12		GH30:23	2657	2091	6	X
5	GH30_5	5		GH30:24	6845	6336	1	X
6	GH30_6	5	2	GH30:25	3437	3315	2	X
29	GH30_7	36		GH30:26	2524	2215	7	X		X		3.2.1.*	3
34	GH30_8	118		GH30:27	8402	7884	6	X			14	3.2.1.8&3.2.1.136	6
26	GH30_8	49	1	GH30:28	2923	2277	11	X	X		3	3.2.1.8&3.2.1.136	1
11	GH30_8	15		GH30:29	9608	9133	2	X
13	GH30_9	25		GH30:30	11,596	10,861	2	X				3.2.1.31	1
5	GH30_		7	GH30:31	4096	3716	3	X
7	GH30_		8	GH30:32	11,587	11,365	2	X
5	GH30_		5	GH30:33	10,383	10,133	1	X

ISSN: 2731-3654