Table 2 Benchmarking of GH30 subfamily annotation
Sensitivity of GH30 subfamily annotation | Subfamily members | ||||
|---|---|---|---|---|---|
CAZy subfamily | dbCAN-HMM | dbCAN-Diamond | CUPP fast-filtering | CUPP full-filtering | |
GH30_1 | 0.992 | 0.995 | 0.995 | 1.000 | 380 |
GH30_2 | 1.000 | 1.000 | 1.000 | 1.000 | 157 |
GH30_3 | 0.031 | 0.780 | 0.980 | 0.993 | 446 |
GH30_4 | 1.000 | 1.000 | 0.987 | 1.000 | 81 |
GH30_5 | 0.985 | 0.426 | 1.000 | 1.000 | 136 |
GH30_6 | 1.000 | 1.000 | 1.000 | 1.000 | 6 |
GH30_7 | 1.000 | 0.872 | 1.000 | 1.000 | 39 |
GH30_8 | 0.973 | 0.844 | 0.997 | 0.990 | 405 |
GH30_9 | 0.000 | 1.000 | 1.000 | 1.000 | 37 |
Overall | 0.713 | 0.854 | 0.992 | 0.996 | 1687 |