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Fig. 3 | Biotechnology for Biofuels

Fig. 3

From: Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

Fig. 3

Unique pattern of sequence divergence between duplicates is observed in Coniochaeta sp. 2T2.1 (red) compared to haploid (black) and diploid/dikaryotic (blue) fungi. For each genome, a self-BLASTp was conducted to identify duplicates by reciprocal best blast hits (BBHs; min e value 1e−5). The fraction of bidirectional best blast hits (BBHs) at varying identity levels (steps = 0.25%) are then plotted (y-axis, grey = 0) for each lineage (x-axis). Only published PacBio genomes and close relatives of 2T2.1 were included. Despite being dispersed across most of the fungal kingdom, a consistent pattern is observed based on ploidy regardless of phylogenetic neighborhood

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