Skip to main content

Table 2 Significantly and highly upregulated CAZymes (padj-value ≤ 0.05 and Log2 FC ≥ 10) from Coniochaeta sp. 2T2.1 on wheat straw (WS) and pretreated wheat straw (PTWS) compared with glucose (Glu) cultures

From: Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

JGI-IDs CAZyme domains Type of enzymeb FPKM_WS/FPKM_Glu FPKM_PTWS/FPKM_Glu TPMd in WS TPMd in PTWS TPMd in Glu
1061794 GH51 α-l-Arabinofuranosidase 71,701 799 1068.13 11.79 0.01
961618 GH62 α-l-Arabinofuranosidase 35,028 262 2435.17 18.27 0.07
1069155 CE1-CBM1 Feruloyl esterase 23,908 1390 1424.70 82.70 0.05
1273638 CE5-CBM1 Acetyl xylan esterase 16,257 1807 1856.79 207.17 0.11
1273701a CE5-CBM1 Acetyl xylan esterase 51,046 10,010 1013.94 199.35 0.02
1196733a GH11 Endo-β-1,4-xylanase 32,085 7111 3186.54 705.95 0.10
1172553 GH11-CBM1 Endo-β-1,4-xylanase 28,718 2526 1853.9 163.06 0.06
1242067 GH62 α-l-Arabinofuranosidase 638.69c 2.32c 951.47 3.46 0
955194 GH10-CBM1 Endo-β-1,4-xylanase 19,212 1272 572.4 38.06 0.02
1005138 GH10-CBM1 Endo-β-1,4-xylanase 14,003 1698 1390.73 168.76 0.09
1231977 GH11-CBM1 Endo-β-1,4-xylanase 9612 1190 1241.06 153.69 0.12
344640 GH51 α-l-Arabinofuranosidase 5111 75 812.27 11.94 0.15
1206532 GH62-CBM1 α-l-Arabinofuranosidase 13,418 583 1066.11 46.29 0.07
539071 CE1-CBM1 Feruloyl esterase 2770 65 935.49 22.03 0.33
1096633a GH11 Endo-β-1,4-xylanase 10,340 8725 616.15 520.15 0.06
953908 GH12 Endoglucanase 9423 48 327.55 1.69 0.03
970254 GH12 Endoglucanase 3973 135 1282.40 43.43 0.31
382788 GH93 Exo-α-l-1,5-arabinanase 2440 19 1175.6 9.48 0.47
980755 AA9 Lytic polysaccharide monoxygenases 102.06c 33.52c 152.04 50.20 0
969860 CBM1-CE15 4-O-Methyl-glucuronoyl methylesterase 3212 519 143.54 23.22 0.04
645961 GH10 Endo-β-1,4-xylanase 2013 160 549.92 43.82 0.27
1207935 GH127 β-l-Arabinofuranosidase 2109 62 115.2 3.42 0.05
1265978 GH27-CBM35 α-Galactosidase 32.82c 0.85c 48.89 1.26 0
1186025 GH30_5 Endo-β-1,6-galactanase 60.49c 8.71c 90.11 12.94 0
1273538 GH74-CBM1 Xylo-endoglucanase 25.48c 8.43 37.97 12.60 0
646743 GH7-CBM1 Reducing end-acting cellobiohydrolase 2035 1322 1779.11 1154.39 0.85
1054649a GH7-CBM1 Reducing end-acting cellobiohydrolase 2332 2006 787.48 678.04 0.33
  1. aTranscripts that were significantly and highly upregulated in PTWS compared with Glu. Transcripts in this table were significantly and highly upregulated in WS compared with Glu
  2. bPutative activity deduced from top-ten hits in BLASTp search against NCBI-nr database
  3. cTranscripts that showed values equal to zero in glucose. Here, we showed the FPMK average values in WS or PTWS
  4. dAverage of transcripts per kilobase million
\