Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

Mondo, Stephen J.; Jiménez, Diego Javier; Hector, Ronald E.; Lipzen, Anna; Yan, Mi; LaButti, Kurt; Barry, Kerrie; van Elsas, Jan Dirk; Grigoriev, Igor V.; Nichols, Nancy N.

doi:10.1186/s13068-019-1569-6

Biotechnology for Biofuels and Bioproducts

Table 2 Significantly and highly upregulated CAZymes (padj-value ≤ 0.05 and Log2 FC ≥ 10) from Coniochaeta sp. 2T2.1 on wheat straw (WS) and pretreated wheat straw (PTWS) compared with glucose (Glu) cultures

From: Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

JGI-IDs	CAZyme domains	Type of enzyme^b	FPKM__WS/FPKM__Glu	FPKM__PTWS/FPKM__Glu	TPM^d in WS	TPM^d in PTWS	TPM^d in Glu
1061794	GH51	α-l-Arabinofuranosidase	71,701	799	1068.13	11.79	0.01
961618	GH62	α-l-Arabinofuranosidase	35,028	262	2435.17	18.27	0.07
1069155	CE1-CBM1	Feruloyl esterase	23,908	1390	1424.70	82.70	0.05
1273638	CE5-CBM1	Acetyl xylan esterase	16,257	1807	1856.79	207.17	0.11
1273701^a	CE5-CBM1	Acetyl xylan esterase	51,046	10,010	1013.94	199.35	0.02
1196733^a	GH11	Endo-β-1,4-xylanase	32,085	7111	3186.54	705.95	0.10
1172553	GH11-CBM1	Endo-β-1,4-xylanase	28,718	2526	1853.9	163.06	0.06
1242067	GH62	α-l-Arabinofuranosidase	638.69^c	2.32^c	951.47	3.46	0
955194	GH10-CBM1	Endo-β-1,4-xylanase	19,212	1272	572.4	38.06	0.02
1005138	GH10-CBM1	Endo-β-1,4-xylanase	14,003	1698	1390.73	168.76	0.09
1231977	GH11-CBM1	Endo-β-1,4-xylanase	9612	1190	1241.06	153.69	0.12
344640	GH51	α-l-Arabinofuranosidase	5111	75	812.27	11.94	0.15
1206532	GH62-CBM1	α-l-Arabinofuranosidase	13,418	583	1066.11	46.29	0.07
539071	CE1-CBM1	Feruloyl esterase	2770	65	935.49	22.03	0.33
1096633^a	GH11	Endo-β-1,4-xylanase	10,340	8725	616.15	520.15	0.06
953908	GH12	Endoglucanase	9423	48	327.55	1.69	0.03
970254	GH12	Endoglucanase	3973	135	1282.40	43.43	0.31
382788	GH93	Exo-α-l-1,5-arabinanase	2440	19	1175.6	9.48	0.47
980755	AA9	Lytic polysaccharide monoxygenases	102.06^c	33.52^c	152.04	50.20	0
969860	CBM1-CE15	4-O-Methyl-glucuronoyl methylesterase	3212	519	143.54	23.22	0.04
645961	GH10	Endo-β-1,4-xylanase	2013	160	549.92	43.82	0.27
1207935	GH127	β-l-Arabinofuranosidase	2109	62	115.2	3.42	0.05
1265978	GH27-CBM35	α-Galactosidase	32.82^c	0.85^c	48.89	1.26	0
1186025	GH30_5	Endo-β-1,6-galactanase	60.49^c	8.71^c	90.11	12.94	0
1273538	GH74-CBM1	Xylo-endoglucanase	25.48^c	8.43	37.97	12.60	0
646743	GH7-CBM1	Reducing end-acting cellobiohydrolase	2035	1322	1779.11	1154.39	0.85
1054649^a	GH7-CBM1	Reducing end-acting cellobiohydrolase	2332	2006	787.48	678.04	0.33

^aTranscripts that were significantly and highly upregulated in PTWS compared with Glu. Transcripts in this table were significantly and highly upregulated in WS compared with Glu
^bPutative activity deduced from top-ten hits in BLASTp search against NCBI-nr database
^cTranscripts that showed values equal to zero in glucose. Here, we showed the FPMK average values in WS or PTWS
^dAverage of transcripts per kilobase million

Back to article page

ISSN: 2731-3654

Contact us

General enquiries: journalsubmissions@springernature.com