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Table 3 Log2 FC and normalized expression values (FPKM) of the significantly and highly expressed proteins from CAZy family AA9 (LPMOs) in WS and PTWS compared with Glu

From: Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

JGI-IDs Log2 FC (WS vs Glu) Log2 FC (PTWS vs Glu) FPKM_WS/FPKM_Glu FPKM_PTWS/FPKM_Glu
1170506a 9.9 9.4 4980 3189
1175568a 9.9 7.7 4670 1019
1179874 8.3 6.4 538 135
1216758 8.2 9 23.47b 39.48 f
1220247ac 9 7.1 786 199
1230134 8.5 5.6 966 116
1231383 7.1 8.2 7.43b 16.44 f
1232676a 9.1 5.6 1046 87
1245155c 8 5.7 360 75
510059c 8.5 6.8 535 164
980755a 10 8.4 102.06b 33.52 f
980894c 8.5 6.6 577 148
  1. aAre the top-five upregulated proteins in WS and PTWS compared with Glu
  2. bProteins that showed values equal to zero in glucose. Here, we showed the FPMK average values in WS or PTWS
  3. cLPMOs with CBM1 domains