Table 2 Genomic variants observed in strain ORCB002
From: Gene targets for engineering osmotolerance in Caldicellulosiruptor bescii
Locus tag | Annotation | Putative homologs in C. bescii JWCB005 genome | Resulting mutation |
|---|---|---|---|
B5X54_RS04240 | CopG antitoxin of type II toxin-antitoxin system | No | Deletion/missing |
B5X54_RS04245 | Hypothetical protein | No | Deletion/missing |
B5X54_RS04250 | Hypothetical protein | WP_015907537.1 | Deletion/missing |
B5X54_RS04255 | Hypothetical protein | WP_015907536.1 | Deletion/missing |
B5X54_RS04260 | Hypothetical protein | WP_015907535.1 | Deletion/missing |
B5X54_RS04275 | XRE family transcriptional regulator | No | Deletion/missing |
B5X54_RS04280 | DNA primase | No | Deletion/missing |
B5X54_RS04285 | protein of unknown function, DUF 3987 | WP_015907299.1 | Deletion/missing |
B5X54_RS04290 | Site-specific recombinase XerD | No | Deletion/missing |
B5X54_RS07480 | Dihydroorotate dehydrogenase electron transfer subunit | No | Partial deletion |
B5X54_RS07485 | Dihydroorotate dehydrogenase (NAD+) catalytic subunit, pyrD | No | Deletion/missing |
B5X54_RS07490 | Probable phosphoglycerate mutase | No | Deletion/missing |
B5X54_RS07495 | Orotate phosphoribosyltransferase, pyrE | No | Deletion/missing |
B5X54_RS07500 | Double zinc ribbon | No | Deletion/missing |
B5X54_RS07505 | Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family | No | Deletion/missing |
B5X54_RS07510 | Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family | No | Partial deletion |
B5X54_RS01120 | ABC-2 type transport system ATP-binding protein | No | Frameshift |
B5X54_RS07295 | Protein of unknown function | No | Silent mutation |
B5X54_RS08370 | Molecular chaperone DnaK | No | Substitution |
SAMN04515608_2488, no analogous locus tag | Carbohydrate ABC transporter substrate-binding protein, CUT1 family | WP_105908637.1, WP_099716409.1 | 2 Adjacent substitutions |