Table 4 Comparison of PRM and TMT quantification results
Accession | Protein description | Gene name | PM_PS ratio | PL_PM ratio | ||
|---|---|---|---|---|---|---|
PRM | TMT | PRM | TMT | |||
TRINITY_DN143250_c1_g6 | Pectate lyase | PL | 43.325 | 1.392 | 2.029 | #N/A |
TRINITY_DN143028_c0_g1 | Pectinesterase | PE | 1.470 | 0 | 1.695 | 1.293 |
TRINITY_DN142943_c1_g1 | Polygalacturonase | PG2 | 0.799 | 0.566 | 0.993 | #N/A |
TRINITY_DN142424_c1_g1 | Furostanol glycoside 26- O-beta-glucosidase | F26G | 4.390 | 1.853 | 1.185 | 1.301 |
TRINITY_DN142386_c5_g1 | Beta-galactosidase | β-GAL2 | 1.620 | 0 | 1.071 | 1.394 |
TRINITY_DN142336_c1_g1 | Peroxidase | PRX | 1.303 | 0.594 | 0.707 | 1.304 |
TRINITY_DN142120_c0_g1 | Auxin efflux carrier | AEC | 2.593 | 1.245 | 0.535 | 0 |
TRINITY_DN142119_c1_g3 | Beta-fructofuranosidase | β-FRU | 1.497 | 0.655 | 0.500 | 0 |
TRINITY_DN141662_c1_g4 | Alpha/beta hydrolase | α-HY | 3.192 | 1.243 | 0.306 | 0 |
TRINITY_DN141432_c1_g2 | Beta-D-xylosidase | XYL | 1.717 | 0 | 0.606 | 1.398 |
TRINITY_DN141264_c1_g1 | Peroxidase N1 | PRX2 | 0.828 | 0.619 | 1.651 | 0 |
TRINITY_DN141074_c0_g1 | Polygalacturonase | PG4 | 1.620 | 1.464 | 0.680 | 0 |
TRINITY_DN139660_c0_g1 | Peroxidase 53 | PRX5 | 0.703 | 0.644 | 1.239 | 0 |
TRINITY_DN139379_c0_g3 | Cationic peroxidase 1 | PRX3 | 0.421 | 0.546 | 1.208 | 0 |
TRINITY_DN137437_c3_g1 | Beta-glucosidase 33 | BGLU33 | 1.291 | 0.636 | 0.317 | 0 |
TRINITY_DN137338_c1_g4 | Endoglucanase 19 | ENDOG19 | 15.470 | 1.502 | 0.232 | 0 |
TRINITY_DN136333_c1_g2 | Endoglucanase 8 | ENDOG8 | 3.207 | 1.220 | 0.696 | 0 |
TRINITY_DN135837_c0_g4 | Dirigent-like protein | DIR1 | 0.733 | 0.597 | 0.927 | 0 |