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Table 3 X-ray data collection and refinement statistics

From: Phylogenetics-based identification and characterization of a superior 2,3-butanediol dehydrogenase for Zymomonas mobilis expression

 

WT SmBDH

SmBDH Q247A

SmBDH Q247A + V139Q

Data collection

 Space group

P43212

P43212

P43212

 Unit cell (Å, °)

a = b = 108.17, c = 82.88

α = β = γ = 90.00

a = b = 108.68, c = 82.95

α = β = γ = 90.0

a = b = 108.80, c = 83.11

α = β = γ = 90.0

 Wavelength (Å)

1.54178

1.54178

1.54178

 Temperature (K)

100

100

100

 Resolution (Å)

25.0–2.0 (2.1–2.0)

25.0–1.9 (2.0–1.9)

25.0–1.8 (1.9–1.8)

 Unique reflections

33,823 (4496)

39,724 (5531)

46,796 (6911)

 Rinta

0.138 (0.689)

0.109 (0.748)

0.093 (0.793)

 Average redundancy

11.4 (8.8)

17.3 (10.6)

17.0 (12.5)

 < I > / < σ(I) > 

11.2 (2.0)

18.7 (2.6)

21.7 (1.9)

 Completeness (%)

100 (100)

100 (100)

100 (100)

Refinement

 R/Rfree

0.162 (0.214)/0.279 (0.378)

0.168 (0.340)/0.222 (0.347)

0.160 (0.210)/0.295 (0.342)

 Protein atoms

3736

3792

3766

 Water molecules

432

551

558

 Other atoms

141

151

70

 r.m.s.d. from ideal bond lengthb (Å)

0.010

0.009

0.010

 r.m.s.d. from ideal bond anglesb (°)

1.497

1.486

1.612

 Wilson B-factor

21.6

19.5

21.2

 Average B-factor for protein atoms (Å2)

25.2

25.0

24.0

 Average B-factor for water molecules (Å2)

33.0

32.6

33.1

Ramachandran plot statisticsc (%)

 Allowed

99.8

99.8

99.8

 Favored

96.9

97.2

97.3

 Number of outliers

1

1

1

  1. Statistics for the highest resolution bin are shown in parenthesis
  2. aRint = ∑hkl ∑i|Ii(hkl)—‹I(hkl)›|/ ∑hkl ∑i Ii(hkl), where Ii(hkl) is the intensity of an individual reflection and ‹I(hkl)› is the mean intensity of a group of equivalents; the sums are calculated over all reflections with more than one equivalent measured
  3. b[56]
  4. c[55]