Table 2 Thirty-eight differentially expressed genes highlighted in our analysis were involved in 19 reactions in the starch and sucrose metabolism and associated glycolysis reactions

Misin01G145100

BG8

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

1G64760

03g45390

2.22

11G251200

Misin01G337100

Beta-1,3-glucanase

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

03g25790

2.41

04G316000

Misin01G358800

SUS3

Sucrose synthase

2.4.1.13

4G02280

03g22120

1.98

Misin02G115300

T11I18

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

3G04010

03g45390

1.99

12G221200

13G183300

15G100500

Misin02G205400

BAM1

Beta-amylase

3.2.1.2

3G23920

10g32810

2.36

2.37

Misin02G326400

Beta-1,3-glucanase

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

03g25790

2.53

05G228900

Misin02G341300

Phosphoglycerate mutase

Phosphoglycerate mutase

5.4.2.11/.12

03g21260

2.45

4.35

Misin03G195400

ISA3

Isoamylase

3.2.1.68

4G09020

09g29404

–

1.36

03G244700

Misin03G235900

TIM

Triose-phosphate isomerase

5.3.1.1

2G21170

09g36450

− 0.59

Misin03G316100

HEXO2

Beta-N-acetylhexosaminidase

3.2.1.52

1G05590

07g38790

3.91

Misin04G207500

AMY1

Alpha-amylase

3.2.1.1

4G25000

1.67

Misin04G215400

ISA3

Isoamylase

3.2.1.68

4G09020

09g29404

1.07

04G236800

Misin04G312400

Beta-amylase

3.2.1.2

5.04

02G101700

11G195000

Misin05G335800

PHS2

Glycogen phosphorylase

2.4.1.1

3G46970

01g63270

1.07

Misin06G202700

F15G16.1/SF10

Glucose-6-phosphate 1-epimerase

5.1.3.15

3G61610

01g46950

− 1.67

TF regulating 48 target genes

Misin06G358300

BGLU42/4

Beta-glucosidase

3.2.1.21

5G36890

01g67220

1.27

T131300

Misin07G322000

LSF1/SEX4

Isoamylase

3.2.1.68

3G01510

08g29160

− 1.02

–

Misin07G352300

SBE2.2

1,4-Alpha-glucan branching enzyme

2.4.1.18

5G03650

02g32660

1.92

05G273100

Misin10G070300

SPS5

Sucrose-phosphate synthase

2.4.1.14

11g12810

1.1

03G157300

04G243500

04G398500

05G381500

07G307900

Misin11G067200

cwINV4/OsCIN2

Beta-fructofuranosidase

3.2.1.26

2G36190

04g33740

3.63

06G000800

15G053900

Misin11G111200

BGLU14

Beta-glucosidase

3.2.1.21

2G25630

− 1.26

Misin11G121200

MLS

Malate synthase

2.3.3.9

5G03860

04g40990

5.07

5.71

12G063100

Misin11G141900

BGLU45/18

Beta-glucosidase

3.2.1.21

1G61810

04g43410

− 1.58

Misin11G142000*

BGLU18

Beta-glucosidase

3.2.1.21

04g43410

1.21

Misin12G113600

PFK2

6-Phosphofructokinase

2.7.1.11

5G47810

09g30240

− 6.94

− 6.65

01G471000

11G195000

18G256700

Misin12G147300

BGLU46

Beta-glucosidase

3.2.1.21

1G61820

04g43390

1.12

Misin15G034600

Beta-amylase

3.2.1.2

1.09

04G230700

Misin16G118700

BG1

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

3G57270

− 3.26

Misin17G123500

BG3

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

3G57240

− 2.79

Misin17G131000

DBE1

Isoamylase

3.2.1.68

1G03310

05g32710

1.04

09G177000

Misin17G142700

HEXO3

Beta-N-acetylhexosaminidase

3.2.1.52

1G65590

05g34320

− 0.57

03G257000

07G206800

12G092100

16G048700

Misin17G216100

ALDH12A1

L-Glutamate gamma-semialdehyde dehydrogenase

1.2.1.88

5G62530

4.19

4.17

TF regulating five genes

Misin17G255500

AGPL3/APL3

Glucose-1-phosphate adenylyltransferase

2.7.7.27

05g50380

1.72

Misin18G276400

Glycogen branching

1,4-Alpha-glucan branching enzyme

2.4.1.18

1.77

Misin19G100900

SS2

Starch synthase

2.4.1.21

06g12450

2.44

MisinT226600

BGL2

Glucan endo-1,3-beta-D-glucosidase

3.2.1.39

3G57260

2.45

4.22

MisinT393000

SS3

Starch synthase

2.4.1.21

1G11720

1.63

T178900

MisinT552400

BAM1

Beta-amylase

3.2.1.2

3G23920

10g32810

3.03

T178900