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Table 2 Thirty-eight differentially expressed genes highlighted in our analysis were involved in 19 reactions in the starch and sucrose metabolism and associated glycolysis reactions

From: Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids

GENE Protein name Enzyme name Enzyme codE ATH Rice Leaf FC Stem FC TF
Misin01G145100 BG8 Glucan endo-1,3-beta-D-glucosidase 3.2.1.39 1G64760 03g45390   2.22 11G251200
Misin01G337100 Beta-1,3-glucanase Glucan endo-1,3-beta-D-glucosidase 3.2.1.39   03g25790 2.41   04G316000
Misin01G358800 SUS3 Sucrose synthase 2.4.1.13 4G02280 03g22120   1.98  
Misin02G115300 T11I18 Glucan endo-1,3-beta-D-glucosidase 3.2.1.39 3G04010 03g45390   1.99 12G221200
13G183300
15G100500
Misin02G205400 BAM1 Beta-amylase 3.2.1.2 3G23920 10g32810 2.36 2.37  
Misin02G326400 Beta-1,3-glucanase Glucan endo-1,3-beta-D-glucosidase 3.2.1.39   03g25790 2.53   05G228900
Misin02G341300 Phosphoglycerate mutase Phosphoglycerate mutase 5.4.2.11/.12   03g21260 2.45 4.35  
Misin03G195400 ISA3 Isoamylase 3.2.1.68 4G09020 09g29404 1.36 03G244700
Misin03G235900 TIM Triose-phosphate isomerase 5.3.1.1 2G21170 09g36450   − 0.59  
Misin03G316100 HEXO2 Beta-N-acetylhexosaminidase 3.2.1.52 1G05590 07g38790 3.91   
Misin04G207500 AMY1 Alpha-amylase 3.2.1.1 4G25000   1.67   
Misin04G215400 ISA3 Isoamylase 3.2.1.68 4G09020 09g29404   1.07 04G236800
Misin04G312400   Beta-amylase 3.2.1.2     5.04 02G101700
11G195000
Misin05G335800 PHS2 Glycogen phosphorylase 2.4.1.1 3G46970 01g63270   1.07  
Misin06G202700 F15G16.1/SF10 Glucose-6-phosphate 1-epimerase 5.1.3.15 3G61610 01g46950 − 1.67   TF regulating 48 target genes
Misin06G358300 BGLU42/4 Beta-glucosidase 3.2.1.21 5G36890 01g67220 1.27   T131300
Misin07G322000 LSF1/SEX4 Isoamylase 3.2.1.68 3G01510 08g29160 − 1.02  
Misin07G352300 SBE2.2 1,4-Alpha-glucan branching enzyme 2.4.1.18 5G03650 02g32660   1.92 05G273100
Misin10G070300 SPS5 Sucrose-phosphate synthase 2.4.1.14   11g12810   1.1 03G157300
04G243500
04G398500
05G381500
07G307900
Misin11G067200 cwINV4/OsCIN2 Beta-fructofuranosidase 3.2.1.26 2G36190 04g33740   3.63 06G000800
15G053900
Misin11G111200 BGLU14 Beta-glucosidase 3.2.1.21 2G25630   − 1.26   
Misin11G121200 MLS Malate synthase 2.3.3.9 5G03860 04g40990 5.07 5.71 12G063100
Misin11G141900 BGLU45/18 Beta-glucosidase 3.2.1.21 1G61810 04g43410 − 1.58   
Misin11G142000* BGLU18 Beta-glucosidase 3.2.1.21   04g43410   1.21  
Misin12G113600 PFK2 6-Phosphofructokinase 2.7.1.11 5G47810 09g30240 − 6.94 − 6.65 01G471000
11G195000
18G256700
Misin12G147300 BGLU46 Beta-glucosidase 3.2.1.21 1G61820 04g43390   1.12  
Misin15G034600   Beta-amylase 3.2.1.2     1.09 04G230700
Misin16G118700 BG1 Glucan endo-1,3-beta-D-glucosidase 3.2.1.39 3G57270   − 3.26   
Misin17G123500 BG3 Glucan endo-1,3-beta-D-glucosidase 3.2.1.39 3G57240   − 2.79   
Misin17G131000 DBE1 Isoamylase 3.2.1.68 1G03310 05g32710   1.04 09G177000
Misin17G142700 HEXO3 Beta-N-acetylhexosaminidase 3.2.1.52 1G65590 05g34320   − 0.57 03G257000
07G206800
12G092100
16G048700
Misin17G216100 ALDH12A1 L-Glutamate gamma-semialdehyde dehydrogenase 1.2.1.88 5G62530   4.19 4.17 TF regulating five genes
Misin17G255500 AGPL3/APL3 Glucose-1-phosphate adenylyltransferase 2.7.7.27   05g50380   1.72  
Misin18G276400 Glycogen branching 1,4-Alpha-glucan branching enzyme 2.4.1.18     1.77  
Misin19G100900 SS2 Starch synthase 2.4.1.21   06g12450   2.44  
MisinT226600 BGL2 Glucan endo-1,3-beta-D-glucosidase 3.2.1.39 3G57260   2.45 4.22  
MisinT393000 SS3 Starch synthase 2.4.1.21 1G11720    1.63 T178900
MisinT552400 BAM1 Beta-amylase 3.2.1.2 3G23920 10g32810   3.03 T178900
  1. Leaf/stem FC = Log2 fold-change expression “high NSC”/“Low NSC” hybrids in either lead or stem tissues; ATH/RICE = Homologous protein in Arabidopsis thaliana and rice (The prefixes “AT” or “LOC_Os” were excluded from the gene name). TF, Transcription factor regulating the gene, only TFs that were DE or which regulon was enriched in DE-targets are shown. The prefix “Misin” was excluded from the TF gene name