Table 1 GH families selected from the biogas microbiome data to test the in silico development of a minimum list of unique peptides able to differentiate them from other proteins
GH family | Enzymatic activitiesa | # of protein seeds across every MAG |
|---|---|---|
13 | Some enzymatic activities include: α-amylase, oligo-1,6-glucosidase, α-glucosidase, pullulanase, cyclomaltodextrinase, maltotetraose-forming α-amylase, isoamylase, dextran glucosidase, trehalose-6-phosphate hydrolase, among others acting on complex polysaccharides | 4024 |
2 | Most common activities include β-galactosidases, β-glucuronidases, β-mannosidases, exo-β-glucosaminidases and, in plants, a mannosylglycoprotein endo-β-mannosidase | 2182 |
3 | Exo-acting β-d-glucosidases, α-l-arabinofuranosidases, β-d-xylopyranosidases, N-acetyl-β-d-glucosaminidases, and N-acetyl-β-d-glucosaminide phosphorylases | 2134 |
43 | The major activities reported are α-l-arabinofuranosidases, endo-α-l-arabinanases (or endo-processive arabinanases), and β-d-xylosidases | 1465 |
23 | GHs in this family are lytic transglycosylases of both bacterial and bacteriophage origin and family G lysozymes of eukaryotic origin. Both of these enzymes are active on peptidoglycan, but only the lysozymes are active on chitin and chitooligosaccharides | 1090 |