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Table 1 Docking results for the four candidate transporters, xylE (self-docking) and Gxf1

From: Machine learning and comparative genomics approaches for the discovery of xylose transporters in yeast

Protein name

Xylose

Glucose

Affinity

Δ RMSD from crystal

Affinity

Δ RMSD from crystal

xylE

− 5.8

1.776

− 6

0.619

SuL

− 5.0

0.948

− 5.8

1.166

Gxf1

− 5.3

1.085

− 5.7

1.296

SpH

− 5.4

2.274

− 5.5

2.252

SpX

− 5.5

2.454

− 6

2.668

SpG

− 5.5

2.300

− 5.6

1.223

  1. Affinity represents the stability of the ligand in the binding site (the more negative the better), and ΔRMSD represents the difference in pose between docked prediction and xylE crystal position
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Biotechnology for Biofuels and Bioproducts

ISSN: 2731-3654

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