Table 1 Genes and genomic features associated with SNPs at q-value < 0.1 in the SwAsp genome-wide association study of 65 traits monitored in the Swedish aspen collection
Gene1 | Feature2 | Description(s) | The number of SNPs associated with each trait | |||||
|---|---|---|---|---|---|---|---|---|
DBH | Wall thickness | FibFrac | Height | VessFrac | TWG | |||
7c16159; 7c16161 | Intergenic | 1 | 1 | |||||
15c29048; 15c29049 | Intergenic | 1 | 1 | 1 | ||||
9c19049; 9c19048 | Upstream; downstream | Oxa2A membrane insertase; hypothetical protein | 1 | 1 | ||||
3c8002 | Downstream | MATE efflux family protein | 1 | |||||
1c2354; 1c2355 | Intergenic | 18 | 12 | |||||
4c9179; 4c9180 | Intergenic | 2 | 2 | |||||
5c11372; 5c11373 | Intergenic | 1 | 1 | |||||
10c20558 | Exonic | 2-Oxoglutarate dehydrogenase, E1 | 1 | |||||
10c21196; 10c21197 | Upstream; downstream | Geranyl diphosphate synthase 1; hypothetical protein | 1 | |||||
16c29591 | UTR3 | L-Galactono-1,4-lactone dehydrogenase | 1 | |||||
17c31917; 17c31919 | Intergenic | 1 | ||||||
18c33227; 18c33228 | Intergenic | 1 | ||||||
10c22263; 10c22264 | Intergenic | 1 | ||||||
14c26895 | Intronic | AGAMOUS-like 20 | 1 | |||||
3c6553; 3c6554 | Intergenic | 6 | ||||||
12c24540;12c24542 | upstream; UTR3-downstream | DnaJ homolog subfamily B member; Major facilitator superfamily protein | 5 | 5 | ||||
17c31483 | Downstream | NA | 1 | |||||