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Table 1 List of yeast strains and plasmids used in this study

From: An optimized reverse β-oxidation pathway to produce selected medium-chain fatty acids in Saccharomyces cerevisiae

Strain

Genotype

Reference

CENPK2-1c

MATa; ura3-52; trp1-289; leu2-3_112; his3 Δ1; MAL2-8C; SUC2

EUROSCARF

SHY34

MATa; ura3-52; trp1-289; leu2-3_112; his3 Δ1; MAL2-8C; SUC2, Δfas1, Δfas2, Δfaa2

[63]

VSY0

MATa; ura3-52; trp1-289; leu2-3_112; his3 Δ1; MAL2-8C; SUC2 adh1::loxP adh2Δ::LEU2 adh3::loxP adh4Δ::loxP adh5::loxP

[49, 50]

GDY15

MATa; ura3-52; trp1-289; leu2-3_112; his3 Δ1; MAL2-8C; SUC2 adh1::loxP adh2Δ::LEU2 adh3::loxP adh4Δ::loxP adh5::loxP gpd2Δ

This study

GDY16

MATa; ura3-52; trp1-289; leu2-3_112; his3 Δ1; MAL2-8C; SUC2 adh1::loxP adh2Δ::LEU2 adh3::loxP adh4Δ::loxP adh5::loxP gpd2Δ tes1Δ

This study

GDY19

MATa; ura3-52; trp1-289; leu2-3_112; his3 Δ1; MAL2-8C; SUC2 adh1::loxP adh2Δ::LEU2 adh3::loxP adh4Δ::loxP adh5::loxP gpd2Δ faa2Δ

This study

GDY27

GDY15 Δura3::pHHF2-CnbktB-tENO2, pCCW12-CnpaaH1-tIDP1, pENO2-Cacrt-tPGK1, pTDH3- Tdter -tADH1, KanMX

This study

GDY28

GDY15 Δura3:: pHHF2- cnbktB -tENO2, pCCW12-CnpaaH1-tIDP1, pENO2-Cncrt2-tPGK1, pTDH3- Tdter -tADH1, KanMX

This study

GDY29

GDY15 Δura3:: pHHF2-cnBktB-tENO2, pCCW12-CnpaaH1-tIDP1, pENO2-Ylech-tPGK1, pTDH3- Tdter -tADH1, KanMX

This study

Plasmid

Characteristics

Reference

ACBV007

URA3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12- Cahbd -tIDP1, pENO2-Cacrt-tPGK1, pTDH3- Tdter -tADH1

This study

GDV098

URA3, CEN6ARS4, Kanamycin R, ColE1, pPGK1-erg10-tENO2, pCCW12- Cahbd -tIDP1, pENO2- Cacrt -tPGK1, pTDH3- Tdter -tADH1

This study

FHV022

URA3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2-Cacrt-tPGK1, pTDH3- Tdter -tADH1

This study

GDV151

URA3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12- Ylhad-tIDP1, pENO2-Cacrt-tPGK1, pTDH3- Tdter -tADH1

This study

FHV018

URA3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12-CnpaaH1-tIDP1, pENO2-Cncrt2-tPGK1, pTDH3- Tdter -tADH1

This study

GDV144

URA3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2- Ylech -tPGK1, pTDH3- Tdter -tADH1

This study

GDV116

URA3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2- Cncrt2-tPGK1, pTDH3- Egter -tADH1

This study

GDV124

HIS3, CEN6ARS4, Kanamycin R, ColE1, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2- Cncrt2-tPGK1, pTDH3- Tdter -tADH1

This study

pVS6

Ampicillin R, ColE1, GPD2 5ʹ pHXT7-erg10-tVMA16, pPGK1- Cahbd -tEFM1, pTPI1-CaCRT-tYHI9, pPYK1-Tdter -tIDP1, pADH1-CaADHE2-tRPL3, pTDH3-EcEutE-tRPL41B, KanMX, GPD2 3ʹ

[49]

pVS1

Ampicillin R, ColE1, GPD2 5ʹ pHXT7-erg10-tVMA16, pPGK1-Cahbd-tEFM1, pTPI1-CaCRT-tYHI9, loxP, KanMX, loxP, pPYK1- Egter -tIDP1, pADH1-CaADHE2-tRPL3, GPD2 3ʹ

[49]

pRCCK_GD01

KanMX,2µ, Ampicillin R, ColE1, Cas9, gRNA for GPD2 deletion

This study

FHV016

KanMX,2µ, Ampicillin R, ColE1, Cas9, gRNA for TES1 deletion

This study

pRCCK_SH06

CloNat,2µ, Ampicillin R, ColE1, Cas9, gRNA for FAA2 deletion

Sandra Born (Boles lab)

GDV143

Kanamycin R, ColE1, URA3 5ʹ UTR, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2- Cncrt2-tPGK1, pTDH3- Tdter -tADH1, KanMX, URA3 3ʹ UTR

This study

GDV149

Kanamycin R, ColE1, URA3 5ʹ UTR, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2-Cacrt-tPGK1, pTDH3- Tdter -tADH1, KanMX, URA3 3ʹ UTR

This study

GDV143

Kanamycin R, ColE1, URA3 5' UTR, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2- Cncrt2-tPGK1, pTDH3- Tdter -tADH1, KanMX, URA3 3' UTR

This study

GDV150

Kanamycin R, ColE1, URA3 5ʹ UTR, pHHF2- cnbktB -tENO2, pCCW12- CnpaaH1-tIDP1, pENO2- Ylech -tPGK1, pTDH3- Tdter -tADH1, KanMX, URA3 3ʹ UTR

This study

LBGV022

URA3, CEN6ARS4, Kanamycin R, ColE1

Leonardo J. Beltran (Boles lab)

LBGV024

HIS3, CEN6ARS4, Kanamycin R, ColE1

Leonardo J. Beltran (Boles lab)

  1. Geneticin and Nourseothricin resistance cassettes are indicated by ‘KanMX’ and ‘CloNat’, respectively. Histidine and uracil auxotrophic complementation is also indicated by ‘HIS3’ and ‘URA3’, respectively. The origin of replication regions ‘2µ’ and ‘CENARS’ are also indicated for non-integrative plasmids. Genes from Clostridium acetobutylicum (Ca), Cupriavidus necator (Cn), Euglena gracilis (Eg) or Yarrowia lipolytica (Yl) are indicated as superscript prefixes. Acetoacetyl-CoA thiolase (erg10), β-ketoacyl-CoA thiolase (BktB) 3-hydroxyacyl-CoA dehydrogenase (paaH1, had), 3-hydroxybutyryl-CoA dehydrogenase (hbd), crotonase/ enoyl-CoA hydratase (crt, crt2, ech), trans-2-enoyl-CoA reductase (ter)