New insight into the genetic basis of oil content based on noninvasive three-dimensional phenotyping and tissue-specific transcriptome in Brassica napus

Guo, Liangxing; Chao, Hongbo; Yin, Yongtai; Li, Huaixin; Wang, Hao; Zhao, Weiguo; Hou, Dalin; Zhang, Libin; Zhang, Chunyu; Li, Maoteng

doi:10.1186/s13068-023-02324-0

Biotechnology for Biofuels and Bioproducts

Table 1 Identified QTLs and unique QTLs identified by high-density linkage map for oil content in different tissues of seeds in the KN DH population

From: New insight into the genetic basis of oil content based on noninvasive three-dimensional phenotyping and tissue-specific transcriptome in Brassica napus

Tissues-QTL														KN^a		KN^b and TN^c populations
u-QTL	LOD	Additive	PV	QTL	Chr^a	LOD	Additive	PV	Position	Range-L	Range-R	Chr^a. Region-L (Mb)a	Chr^a. Region-R (Mb)	Consensus QTL	Range	QTL	Chr. Region (Mb)
uqA1-1	3.31	0.031	5.22	qWSMO-A1-1	A1	3.31	0.031	5.22	52.51	49.8	53.5	7.05	7.91
uqA1-2	3.70–5.50	0.036–0.045	5.88–9.21	qICMO-A1-1	A1	5.51	0.045	9.21	58.91	58.9	60	14.04	15.55
				qOCMO-A1-2	A1	3.70	0.044	5.88	58.91	58	60
				qWSMO-A1-2	A1	3.81	0.036	6.07	58.91	58.9	60
uqA1-3	4.56	0.039	7.60	qICMO-A1-2	A1	4.56	0.039	7.60	67.81	67	68.9	18.22	18.65
uqA8-1	3.92–6.51	0.034–0.053	6.25–10.37	qICMO-A8-1	A8	3.92	0.034	6.25	27.61	25.9	28.8	8.59	10.84	cqOC-A8-3	24.7–27.6	KN-qOC-A8-2	9.35–12.03
				qOCMO-A8-1	A8	6.51	0.053	10.37	27.61	25.9	29.7
				qWSMO-A8-1	A8	4.86	0.037	7.63	27.61	24.3	30
uqA8-2	4.40	0.044	7.18	qOCMO-A8-2	A8	4.40	0.044	7.18	33.31	31.7	34.6	10.78	11.07			KN-qOC-A8-2	9.35–12.03
uqA9-1	4.92	0.034	8.57	qRMO-A9-1	A9	4.92	0.034	8.57	113.91	113.7	115.2	26.06	26.46			TN-qOC-A9-3	24.48–27.13
uqA9-2	4.31–6.26	0.023–0.038	8.19–10.75	qRMO-A9-2	A9	6.26	0.038	10.75	123.81	121.9	127	27.06	28.06			TN-qOC-A9-3	24.48–27.13
uqA9-2	4.31–6.26	0.023–0.038	8.19–10.75	qSCMO-A9-2	A9	4.31	0.024	8.19	123.81	120.3	125.8	27.06	28.06			TN-qOC-A9-3	24.48–27.13
uqA9-3	4.39	0.012	8.09	qSCTO-A9-2	A9	4.39	0.012	8.09	127.01	125.8	128.1	27.92	28.25
uqA9-4	5.00	0.025	9.45	qSCMO-A9-3	A9	5.00	0.025	9.45	130.51	129.8	131.6	28.31	28.49
uqA9-5	3.94–6.02	0.016–0.046	7.15–10.19	qICMO-A9-1	A9	6.02	0.046	10.19	134.51	132.6	135.6	28.49	29.72
uqA9-5	3.94–6.02	0.016–0.046	7.15–10.19	qRTO-A9-1	A9	3.94	0.016	7.15	134.91	132.7	135.6	28.49	29.72
uqA9-6	7.57	0.052	12.63	qICMO-A9-2	A9	7.57	0.052	12.63	139.81	137.7	139.9	29.99	30.61			TN-qOC-A9-4	29.49–31.23
uqA9-7	7.61–8.39	0.052–0.224	13.46–13.76	qWSTO-A9-1	A9	7.61	0.224	13.46	142.11	139.9	142.3	30.50	30.82	cqOC-A9-5	140.87–142.35	TN-qOC-A9-4	29.49–31.23
uqA9-7	7.61–8.39	0.052–0.224	13.46–13.76	qWSMO-A9-2	A9	8.39	0.052	13.76	142.11	139.9	142.3	30.50	30.82	cqOC-A9-5	140.87–142.35	TN-qOC-A9-4	29.49–31.23
uqA9-8	7.74	0.062	12.52	qOCMO-A9-2	A9	7.74	0.062	12.52	142.61	142.3	142.9	30.68	31.17			TN-qOC-A9-4	29.49–31.23
uqA9-9	4.69	0.017	8.50	qRTO-A9-2	A9	4.69	0.017	8.50	142.81	142.6	145.9	30.68	31.17			TN-qOC-A9-4	29.49–31.23
uqA9-10	4.14–6.67	0.106–0.048	7.23–11.27	qOCTO-A9-1	A9	4.14	0.106	7.23	146.91	146.4	147.2	31.21	32.53	cqOC-A9-7	146.89–147.59
uqA9-10	4.14–6.67	0.106–0.048	7.23–11.27	qICMO-A9-3	A9	6.67	0.048	11.27	147.21	146.4	148.8	31.21	32.53	cqOC-A9-7	146.89–147.59
uqA9-11	3.70–6.02	0.015–0.046	6.71–10.19	qRTO-A9-3	A9	3.70	0.015	6.71	151.51	151.3	152.3	32.53	32.82
				qOCMO-A9-3	A9	4.47	0.046	7.51	151.51	151.3	152.1
				qWSMO-A9-3	A9	5.33	0.041	9.04	151.51	151.3	152.1
				qICMO-A9-4	A9	6.02	0.045	10.19	151.51	151.3	152.1
uqA9-12	3.48–6.54	0.098–0.208	6.12–11.74	qOCTO-A9-2	A9	3.48	0.098	6.12	152.71	151.8	154.1	32.79	33.75	cqOC-A9-9	152.34–153.03
uqA9-12	3.48–6.54	0.098–0.208	6.12–11.74	qWSTO-A9-2	A9	6.54	0.208	11.74	152.71	151.8	155.2	32.79	33.75	cqOC-A9-9	152.34–153.03
uqA10-1	3.47	− 0.120	6.17	qOCTO-A10-1	A10	3.47	-0.120	6.17	15.21	14.9	15.4	8.17	8.78			TN-qOC-A10	6.25–11.00
uqA10-2	4.57	− 0.153	8.07	qOCTO-A10-2	A10	4.57	-0.153	8.07	19.91	19.4	20.6	11.30	11.81			KN-qOC-A10	9.00–14.08
uqC1-1	4.04	− 0.050	7.08	qICTO-C1	C1	4.04	-0.050	7.08	80.51	79.6	80.9	32.45	34.41
uqC1-2	4.19	− 0.050	7.44	qICTO-C2	C1	4.19	-0.050	7.44	90.61	89.4	91.2	36.21	36.39
uqC3	4.00	0.030	6.71	qRMO-C3-1	C3	4.00	0.030	6.71	134.91	132.7	136.4	28.13	32.84
uqC9	3.38	0.014	5.97	qRTO-C9-2	C9	3.38	0.014	5.97	29.91	28	31	6.48	13.03

^aQTL identified in the research Chao et al. reported [62]
^band ^crepresent QTLs identified in KN and TN populations that Wang et al. [49] and Jiang et al. [28] reported, respectively

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