Table 3 Identification of candidate genes for oil content QTLs in different seed tissues in the KN DH population
Unique-QTL | QTL | Gene alias | A. thaliana Locus | ARALIP pathway(s) | Gene symbol | ARALIP protein family name/isoform |
|---|---|---|---|---|---|---|
uqA1-1 | qWSMO-A1-1 | BnaA01g14400D | AT4G25050 | Plastidial fatty acid synthesis | ACP4 | Acyl carrier protein |
uqA9-6 | qICMO-A9-2 | BnaA09g42770D | AT2G22230 | Plastidial fatty acid synthesis | Â | Hydroxyacyl-ACP dehydrase |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g48250D | AT5G35360 | Plastidial fatty acid synthesis | CAC2 | Biotin carboxylase of heteromeric ACCase |
uqA10-1 | qOCTO-A10-1 | BnaA10g09300D | AT1G08510 | Plastidial fatty acid synthesis | FATB | Acyl-ACP thioesterase B |
uqC3 | qRMO-C3-1 | BnaC03g44430D | AT2G04350 | Plastidial fatty acid synthesis | LACS8 | Long-chain acyl-CoA synthetase (plastidial); long-chain acyl-CoA synthetase |
uqC3 | qRMO-C3-1 | BnaC03g45040D | AT2G05990 | Plastidial fatty acid synthesis | MOD1 | Enoyl-ACP reductase |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g11140D | AT4G34510 | Fatty acid elongation and cuticular wax synthesis | KCS17 | Ketoacyl-CoA synthase |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g11130D | AT4G34520 | Fatty acid elongation and cuticular wax synthesis | FAE1 | Ketoacyl-CoA synthase |
uqA9-5 | qICMO-A9-1 + qRTO-A9-1 | BnaA09g40640D | AT2G26250 | Fatty acid elongation and cuticular wax synthesis | KCS10 | Ketoacyl-CoA synthase |
uqA9-6 | qICMO-A9-2 | BnaA09g44160D | AT1G19440 | Fatty acid elongation and cuticular wax synthesis | KCS4 | Ketoacyl-CoA synthase |
uqC3 | qRMO-C3-1 | BnaC03g46130D | AT2G16280 | Fatty acid elongation and cuticular wax synthesis | KCS9 | Ketoacyl-CoA synthase |
uqA9-4 | qSCMO-A9-3 | BnaA09g40180D | AT3G62860 | TAG degradation | Â | Monoacylglycerol lipase (MAGL) |
uqA1-1 | qWSMO-A1-1 | BnaA01g14480D | AT4G25140 | TAG synthesis | OLEO1 | Oil-body oleosin |
uqA10-1 | qOCTO-A10-1 | BnaA10g09480D | AT5G55240 | TAG synthesis | ATPXG2 | Caleosin |
uqC1-1 | qICTO-C1-1 | BnaC01g34070D | AT3G18570 | TAG synthesis | Â | Oil-body oleosin |
uqC1-1 | qICTO-C1-1 | BnaC01g33800D | AT3G18850 | TAG synthesis | LPAT5 | 1-Acylglycerol-3-phosphate acyltransferase; 1-acylglycerol-3-phosphate acyltransferase |
uqC3 | qRMO-C3-1 | BnaC03g44820D | AT3G24650 | TAG synthesis | ABI3 | Homologous to the maize transcription factor Viviparous-1 |
uqA9-2 | qRMO-A9-2 + qSCMO-A9-2 | BnaA09g38630D | AT3G60620 | Plastidial glycerolipid, galactolipid and sulfolipid synthesis | CDS5 | CDP-DAG Synthase (plastidial) |
uqA9-9 | qRTO-A9-2 | BnaA09g45250D | AT1G15080 | Plastidial glycerolipid, galactolipid and sulfolipid synthesis | LPP2 | Phosphatidate phosphatase |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g10960D | AT4G34930 | Phospholipase |  | Glycosylphosphatidylinositol-specific phospholipase C |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g10850D | AT4G35110 | Phospholipase |  |  |
uqA9-6 | qICMO-A9-2 | BnaA09g43510D | AT2G20950 | Phospholipase | Â | Â |
uqA9-6 | qICMO-A9-2 | BnaA09g43500D | AT2G20960 | Phospholipase | pEARLI4 | Â |
uqC3 | qRMO-C3-1 | BnaC03g46730D | AT2G16900 | Phospholipase | Â | Â |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g11440D | AT4G33790 | Aliphatic suberin synthesis | CER4 | Alcohol-forming fatty acyl-CoA reductase (ER); alcohol-forming fatty acyl-CoA reductase |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g45720D | AT1G14190 | Aliphatic suberin synthesis |  | Omega-hydroxy fatty acyl dehydrogenase; omega-hydroxy fatty acyl dehydrogenase |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g11640D | AT4G34050 | Aromatic suberin synthesis | CCoAOMT1 | Caffeoyl-CoA O-methyltransferase |
uqA1-1 | qWSMO-A1-1 | BnaA01g14970D | AT4G25750 | Cuticular wax synthesis | Â | ABC transporter |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g10330D | AT4G22520 | Cuticular wax synthesis |  | Lipid transfer protein type 6 |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g11810D | AT4G33355 | Cuticular wax synthesis |  | Lipid transfer protein type 1 |
uqA9-2 | qRMO-A9-2 + qSCMO-A9-2 | BnaA09g38540D | AT3G60500 | Cuticular wax synthesis | G3 | CER7 protein involved in wax synthesis |
uqA9-5 | qICMO-A9-1 + qRTO-A9-1 | BnaA09g42120D | AT2G23180 | Cuticular wax synthesis | CYP96A1 | Midchain alkane hydroxylase / cytochrome P450, 96A |
uqA9-7 | qWSTO-A9-1 + qWSMO-A9-2 | BnaA09g44630D | AT1G18280 | Cuticular wax synthesis |  | Lipid transfer protein type 5 |
uqA10-1 | qOCTO-A10-1 | BnaA10g09280D | AT3G53510 | Cuticular wax synthesis | Â | ABC transporter |
uqA10-1 | qOCTO-A10-1 | BnaA10g09530D | AT5G55340 | Cuticular wax synthesis | Â | Wax synthase |
uqA10-1 | qOCTO-A10-1 | BnaA10g09620D | AT5G55350 | Cuticular wax synthesis | Â | Wax synthase |
uqA10-1 | qOCTO-A10-1 | BnaA10g09630D | AT5G55360 | Cuticular wax synthesis | Â | Wax synthase |
uqA10-1 | qOCTO-A10-1 | BnaA10g09610D | AT5G55380 | Cuticular wax synthesis | Â | Wax synthase |
uqA10-1 | qOCTO-A10-1 | BnaA10g09640D | AT5G55410 | Cuticular wax synthesis | Â | Lipid transfer protein type 3 |
uqA10-1 | qOCTO-A10-1 | BnaA10g09590D | AT5G55460 | Cuticular wax synthesis | Â | Lipid transfer protein type 3 |
uqC1-1 | qICTO-C1-1 | BnaC01g34380D | AT3G18280 | Cuticular wax synthesis | Â | Lipid transfer protein type 2 |
uqC3 | qRMO-C3-1 | BnaC03g45240D | AT2G13610 | Cuticular wax synthesis | Â | ABC transporter |
uqC3 | qRMO-C3-1 | BnaC03g45300D | AT2G13820 | Cuticular wax synthesis | Â | Lipid transfer protein type 5 |
uqA1-1 | qWSMO-A1-1 | BnaA01g15140D | AT4G25970 | Eukaryotic phospholipid synthesis | PSD3 | Phosphatidylserine decarboxylase |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g46210D | AT1G13560 | Eukaryotic phospholipid synthesis | AAPT1 | Diacylglycerol cholinephosphotransferase |
uqC1-1 | qICTO-C1-1 | BnaC01g34540D | AT3G18000 | Eukaryotic phospholipid synthesis | XPL1 | Phosphoethanolamine N-methyltransferase |
uqA1-2 | qICMO-A1-1 | BnaA01g21850D | AT1G58520 | GDSL | RXW8 | Â |
uqA9-5 | qICMO-A9-1 + qRTO-A9-1 | BnaA09g41930D | AT2G23540 | GDSL |  |  |
uqA10-1 | qOCTO-A10-1 | BnaA10g09310D | AT5G55050 | GDSL | Â | Â |
uqC1-1 | qICTO-C1-1 | BnaC01g37130D | AT3G14220 | GDSL | Â | Â |
uqC3 | qRMO-C3-1 | BnaC03g44180D | AT2G04570 | GDSL | Â | Â |
uqA8-1 | qWSMO-A8-1 + qICMO-A8-1 + qOCMO-A8-1 | BnaA08g08850D | AT4G18550 | Lipase |  | Acylhydrolase (DAD1-like) |
uqA9-3 | qSCTO-A9-2 | BnaA09g39950D | AT3G62590 | Lipase | Â | Lipid acylhydrolase-like |
uqA9-5 | qICMO-A9-1 + qRTO-A9-1 | BnaA09g42230D | AT2G22170 | Lipase |  |  |
uqA9-6 | qICMO-A9-2 | BnaA09g44300D | AT1G19190 | Lipase | Â | Â |
uqA9-7 | qWSTO-A9-1 + qWSMO-A9-2 | BnaA09g44570D | AT1G18460 | Lipase |  |  |
uqA9-12 | qOCTO-A9-2 + qWSTO-A9-2 | BnaA09g51230D | AT1G02660 | Lipase |  | Lipid acylhydrolase-like |
uqA9-12 | qOCTO-A9-2 + qWSTO-A9-2 | BnaA09g50430D | AT5G65158 | Lipase |  |  |
uqC1-1 | qICTO-C1-1 | BnaC01g37230D | AT3G14075 | Lipase | Â | Lipid acylhydrolase-like |
uqA9-1 | qRMO-A9-1 | BnaA09g36000D | AT3G56600 | Lipid signaling | Â | Phosphatidylinositol-4-kinase γ |
uqA9-1 | qRMO-A9-1 | BnaA09g36300D | AT3G56960 | Lipid signaling | PIP5K4 | Phosphatidylinositol-phosphate kinase type IB |
uqA9-2 | qRMO-A9-2 + qSCMO-A9-2 | BnaA09g37990D | AT3G59770 | Lipid signaling | SAC9 | Sac domain-containing phosphoinositide phosphatase |
uqA9-4 | qSCMO-A9-3 | BnaA09g40500D | AT2G26420 | Lipid signaling | PIP5K3 | Phosphatidylinositol-phosphate kinase type IB |
uqA9-6 | qICMO-A9-2 | BnaA09g43530D | AT2G20900 | Lipid signaling | ATDGK5 | Diacylglycerol kinase |
uqA9-7 | qWSTO-A9-1 + qWSMO-A9-2 | BnaA09g44740D | AT1G76690 | Lipid signaling | OPR2 | Oxo-Phytodienoic acid reductase |
uqA9-9 | qRTO-A9-2 | BnaA09g45010D | AT1G17420 | Lipid signaling | LOX3 | Lipoxygenase |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g48610D | AT1G08980 | Lipid signaling | ATAMI1 | Fatty acid amide hydrolase |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g47830D | AT1G10900 | Lipid signaling |  | Phosphatidylinositol-phosphate kinase type IB |
uqA10-2 | qOCTO-A10-2 | BnaA10g14700D | AT5G20840 | Lipid signaling | Â | Sac domain-containing phosphoinositide phosphatase |
uqC1-1 | qICTO-C1-1 | BnaC01g37150D | AT3G14205 | Lipid signaling | Â | Sac domain-containing phosphoinositide phosphatase |
uqC1-1 | qICTO-C1-1 | BnaC01g37100D | AT3G14270 | Lipid signaling | FAB1B | Phosphatidylinositol-phosphate kinase type III |
uqC3 | qRMO-C3-1 | BnaC03g45030D | AT2G06050 | Lipid signaling | OPR3 | Oxo-Phytodienoic acid reductase |
uqA1-2 | qICMO-A1-1 | BnaA01g21980D | AT1G59820 | Miscellaneous: lipid related | ALA3 | Translocase |
uqA9-7 | qWSTO-A9-1 + qWSMO-A9-2 | BnaA09g44980D | AT1G17500 | Miscellaneous: lipid related |  | Translocase |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g46440D | AT1G13210 | Miscellaneous: lipid related | ACA.l | Translocase |
uqA9-12 | qOCTO-A9-2 + qWSTO-A9-2 | BnaA09g50730D | AT1G04010 | Miscellaneous: lipid related | PSAT1 | Phospholipid:acyl acceptor Acyltransferase |
uqC1-1 | qICTO-C1-1 | BnaC01g33520D | AT4G17480 | Miscellaneous: lipid related | Â | Thioesterase (PPT1-like) |
uqC3 | qRMO-C3-1 | BnaC03g43340D | AT3G23530 | Miscellaneous: lipid related | Â | Cyclopropane fatty acid synthase |
uqA8-2 | qOCMO-A8-2 | BnaA08g12350D | AT4G31810 | Mitochondrial fatty acid and lipoic acid synthesis | Â | Mitochondrial enoyl-CoA hydratase |
uqA9-6 | qICMO-A9-2 | BnaA09g43570D | AT2G20860 | Mitochondrial fatty acid and lipoic acid synthesis | LIP1 | Lipoate synthase |
uqC3 | qRMO-C3-1 | BnaC03g44210D | AT2G04540 | Mitochondrial fatty acid and lipoic acid synthesis | Â | Ketoacyl-ACP synthase |
uqA1-5 | qICMO-A1-2 | BnaA01g26210D | AT3G19260 | Sphingolipid synthesis | LAG1 HOMOLOG 2 | Ceramide synthase |
uqA8-1 | qICMO-A8-1 + qOCMO-A8-1 + qWSMO-A8-1 | BnaA08g10210D | AT4G22330 | Sphingolipid synthesis | ATCES1 | Ceramidase |
uqA9-2 | qRMO-A9-2 + qSCMO-A9-2 | BnaA09g39290D | AT3G61580 | Sphingolipid synthesis |  | Sphingobase-D8 desaturase |
uqA9-6 | qICMO-A9-2 | BnaA09g43940D | AT2G19880 | Sphingolipid synthesis | Â | Glucosylceramide synthase (UDP-glucose-dependent) |
uqA9-10 | qOCTO-A9-1 + qICMO-A9-3 | BnaA09g46200D | AT1G13580 | Sphingolipid synthesis | LAG13 | Ceramide synthase |