Table 1 Features of assembled genome and gene set for P. funiculosum NCIM1228
Features | Observations |
|---|---|
Genome statistics | |
Sequencing technology | Roche 454 |
Genome size | 37.75 (Mb) |
Sequencing coverage | 19x |
HQ reads | 9,21,942 |
HQ bases | 4038,20,878 |
Average read length | 438 |
Number of contigs | 1248 |
Number of large contigs (> 500 bp) | 888 |
Quality control | |
CEGMA (full length genes recovered) | 95.56% (237/248) |
CEGMA (partial length genes recovered) | 98.39% (244/248) |
Annotation (Software used) | |
Total proteins predicted (MAKER) | 10,739 |
Hypothetical proteins | 2,621 |
CAZymes predicted (CAZy database) | 298 |
TFs predicted (PFAM) | 451 |