Systematic identification of CAZymes and transcription factors in the hypercellulolytic fungus Penicillium funiculosum NCIM1228 involved in lignocellulosic biomass degradation

Pasari, Nandita; Gupta, Mayank; Sinha, Tulika; Ogunmolu, Funso Emmanuel; Yazdani, Syed Shams

doi:10.1186/s13068-023-02399-9

Biotechnology for Biofuels and Bioproducts

Table 2 Biomass degrading enzymes in P. funiculosum NCIM1228

From: Systematic identification of CAZymes and transcription factors in the hypercellulolytic fungus Penicillium funiculosum NCIM1228 involved in lignocellulosic biomass degradation

Enzyme	EC Number	CAZy Family	Protein ID
1. Cellulose-degrading enzymes
Cellobiohydrolase	3.2.1.91	GH6	C0037G1.53
Cellobiohydrolase	3.2.1.91	GH7	C0012G4.113
β-1,4-Endoglucanase	3.2.1.4	GH5	C0026G2.46
			C0035G2.46
			C0045G0.59
	3.2.1.75		C0007G0.69
	3.2.1.4	GH7	C0064G0.26
		GH12	C0007G4.92
		GH45	C0019G3.117
		GH45	C0041G1.26
Xyloglucan-specific β-1,4-endoglucanase		GH74	C0011G4.0
Xyloglucan-specific β-1,4-endoglucanase	3.2.1.151	GH12	C0042G1.114
β-1,3(4)-Endoglucanase	3.2.1.6	GH16	C0015G4.46
		GH5	C0015G2.53
		GH5	C0029G2.29
Lytic polysaccharide monooxygenases (LPMOs)		AA9	C0004G6.48
β-Glucosidase	3.2.1.21	GH1	C0006G1.88
			C0032G1.73
			C0016G3.190
			C0013G1.55
			C0113G0.42
		GH3	C0001G11.72
			C0081G0.181
			C0094G0.81
			C0006G5.25
			C0003G4.15
			C0040G0.38
			C0003G5.49
			C0018G2.2
			C0042G1.32
			C0017G2.95
			C0069G0.5
2. Hemicellulose-degrading enzymes
α-Galactosidase	3.2.1.22	GH27	C0001G7.121
		GH27	C0012G1.39
		GH36	C0020G1.21
β-1,4-Endoxylanase	3.2.1.8	GH10	C0041G1.86
		GH11	C0015G3.0
			C0183G0.0
			C0132G0.8
			C0011G4.30
			C0095G0.55
		GH30	C0129G0.4
		GH30	C0002G4.51
β-d-Xylosidase	3.2.1.37	GH3	C0005G6.188
			C0137G0.7
			C0024G0.29
		GH43	C0013G3.69
		GH43	C0018G3.79
l-Arabinofuranosidase	3.2.1.55	GH43	C0005G0.22
		GH43	C0048G1.60
		GH51	C0052G1.192
		GH51	C0001G6.63
		GH54	C0154G0.0
			C0068G0.36
			C0074G0.133
			C0013G2.111
			C0046G0.12
		GH62	C0004G6.30
			C0003G4.112
			C0104G0.23
			C0015G3.38
β-Mannosidase	3.2.1.25	GH5	C0066G0.3
		GH2	C0017G2.58
		GH2	C0021G3.23
β-Endogalactosidase	3.2.1.89	GH53	C0094G0.18
α-Glucuronidase	3.2.1.139	GH67	C0153G0.22
Polygalacturonase	3.2.1.15	GH28	C0065G0.97
			C0138G0.1
			C0017G2.10
			C0037G2.96
			C0026G2.30
			C0061G1.52
			C0040G1.182
			C0011G2.8
Rhamnogalacturonan hydrolase	3.2.1.172	GH28	C0010G1.31
			C0012G1.47
			C0054G1.59
d-4,5-unsaturated β-Glucuronyl hydrolase	3.2.1. -	GH88	C0034G2.72
d-4,5-unsaturated β-Glucuronyl hydrolase	3.2.1. -	GH88	C0059G1.60
Rhamnogalacturonan acetylesterase	3.1.1.86	CE12	C0108G0.76
Acetyl xylan esterase	3.1.1.72	CE2	C0048G1.122
Acetyl xylan esterase	3.1.1.72	CE5	C0047G0.53
Feruloyl esterase	3.1.1.73	CE1	C0005G1.55
3. Pectin-degrading enzymes
Pectinesterase	3.1.1.11	GH28, CE8	C0037G2.96
Pectate lyase	4.2.2.2	PL3	C0124G0.38
Pectate lyase	4.2.2.2	PL1	C0219G0.0
Pectin lyase	4.2.2.10	PL1	C0030G0.45
Pectin lyase	4.2.2.10	PL1	C0037G1.51

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