Table 3 List of important QTL clusters for investigated traits under LN-stress in association panel
SNP cluster | No. of SNPs | Peak SNP | LG | Position | PVE (%) | P-Value | Haplotype block (Mb) | Traits |
|---|---|---|---|---|---|---|---|---|
RT-A04-1 | 3 | seq-new-rs23378 | A04 | 17,194,300 | 8.62 | 5.45 | 16.88–17.19 | RSRF |
RT-A09-1 | 12 | Bn-A09-p1552993 | A09 | 2,375,212 | 8.15 | 5.13 | 2.22–3.42 | TFW, SFW, RFW, RDW, TRV |
RT-A09-2 | 16 | seq-new-rs41996 | A09 | 4,405,703 | 24.43 | 14.28 | 4.02–4.91 | TDW, RFW, TFW, RDW, SFW, TRN, SDW, TRV |
RT-A10-1 | 5 | Bn-A10-p11396195 | A10 | 12,709,829 | 8.61 | 5.37 | 12.68–12.72 | RFW, RDW, TRN |
RT-C02-1 | 1 | seq-new-rs37919 | C02 | 20,288,793 | 6.84 | 4.35 | 20.17–20.28 | RSRF |
RT-C03-1 | 5 | seq-new-rs28219 | C03 | 8,417,394 | 7.12 | 4.67 | 8.32–8.41 | RFW, TDW, TFW, SDW, RDW |
RT-C03-2 | 6 | Bn-scaff_16925_1-p105130 | C03 | 26,467,466 | 9.29 | 6.03 | 26.46–26.58 | TFW, SFW, TDW, RFW, SDW, TRN |
RT-C03-3 | 8 | seq-new-rs41373 | C03 | 27,421,341 | 9.88 | 6.33 | 27.42–27.46 | RFW, TFW, SFW, RDW, TRV |
RT-C07-1 | 8 | seq-new-rs46512 | C07 | 35,123,112 | 24.04 | 14.57 | 35.12–35.17 | RFW, TFW, RDW, SFW, TRN, TDW, SDW, TRV |
RT-C09-1 | 1 | Bn-scaff_17888_1-p183402 | C09 | 15,811,513 | 4.34 | 6.52 | 15.74–15.82 | TSA |
RT-C09-1 | 5 | seq-new-rs34959 | C09 | 34,541,392 | 9.75 | 6.26 | 34.38–34.54 | TFW, RFW, SFW, TDW, TRV |