Table 2 Genome characteristics of lignin-degrading bacteria
From: Bacterial transformation of lignin: key enzymes and high-value products
Bacteria | Total sequence Length (bp) | GC content (%) | N50 (bp) | CDS | Gene number (gene data base) | References |
|---|---|---|---|---|---|---|
Agrobacterium sp. strain S2 | 9,722,071 | 58.90 | 5151 | – | – | [62] |
Amycolatopsis sp. ATCC 39116 | 8,442,518 | 71.90 | – | 8264 | – | [63] |
Streptomyces viridosporus T7A ATCC 39115 | 8,278,598 | 72.50 | – | 7552 | – | [64] |
Paenibacillus sp. | 7,187,707 | 43.50 | 353,719 | – | – | [65] |
Streptomyces sp. strain S6 | 6,420,514 | 71.23 | 2057 | 9405 | 3822 (COG) | [21] |
Klebsiella sp. strain BRL6-2 | 5,801,355 | 55.24 | – | 5296 | 4599 (COG) 4904 (Pfam) | [66] |
Mangrovibacterium lignilyticum sp. nov | 5,634,442 | 43.40 | 795,598 | – | – | [67] |
Klebsiella variicola P1CD1 | 5,633,647 | 57.30 | – | 5451 | – | [68] |
Raoultella ornithinolytica strain S12 | 5,522,044 | 57.47 | – | 4875 | 3978 (COG) | [43] |
Bacillus cereus AH7-7 | 5,328,700 | 35.36 | – | – | – | [53] |
Ochrobactrum sp. | 5,310,057 | 56.20 | 150,153 | – | – | [65] |
Pseudomonas sp. Hu109A | 5,131,917 | 62.60 | – | 4689 | 4097 (COG) 3577 (GO) 2681(KEGG) | [69] |
Enterobacter lignolyticus SCF1 | 4,814,049 | 57.02 | – | – | 3743 (COG) | [14] |
Arthrobacter sp. C2 | 4,555,954 | 66.23 | – | – | – | [31] |
Arthrobacter sp. strain RT-1 | 4,545,853 | 65.69 | 282,801 | – | 4068 (KEGG) | [70] |
Acinetobacter calcoaceticus CA16 | 4,110,074 | 38.69 | – | 3798 | – | [71] |
Burkholderia sp. Strain LIG30 | 4,002,050 | 66.40 | 84,253 | 4996 | – | [72] |
Meridianimaribacter sp. CL38 | 3,332,696 | 33.13 | 595,671 | 2930 | 2230 (COG) 1313 (KEGG) | [73] |
Pandoraea sp. ISTKB | 2,139,250 | 62.05 | 132,761 | 5356 | 1351 (KEGG) 4603 (Pfam) | [74] |