Table 1 Similarity analysis of protein domain and lignin products comparison in candidate lignin degrading genes
From: Lignin bioconversion based on genome mining for ligninolytic genes in Erwinia billingiae QL-Z3
Gene ID | Gene name | Encode protein | Reference organism | Same domain | % Identity/aa | Accession no | Lignin products |
|---|---|---|---|---|---|---|---|
Chr_48 | / | Dyp-type peroxidase | Pseudomonas putida KT2440 Streptomyces pharetrae CZA14 | IPR048328 | 31/298 25/298 | WP_010954130 OSZ61955 | Vanillic acid |
Chr_205 | pgeF | polyphenol oxidase/Laccase | Pseudomonas putida KT2440 Sphingobium sp. SYK-6 | – | 56/242 35/242 | WP_010951886 WP_014078201 | / |
Chr_410 | gshB | Glutathione synthase | Pseudomonas putida KT2440 Sphingobium sp. SYK-6 | IPR004215 IPR011761 IPR004218 | 66/314 42/314 | WP_010955561 BAK68397 | / |
Chr_468 | / | SDR family oxidoreductase | Pseudomonas putida KT2440 Sphingobium sp. SYK-6 | / | 33/250 38/250 | WP_003249597 WP_014077645 | / |
Chr_858 | tauD | Taurine dioxygenase | Sphingobium sp. SYK-6 | IPR003819 | 45/284 | WP_014075385 | / |
Chr_996 | / | NADP dependent oxidoreductase | Pseudomonas putida KT2440 Sphingobium sp. SYK-6 | IPR006115 IPR029154 | 31/304 31/304 | WP_010955321 WP_014076334 | / |
Chr_1016 | gorA | Glutathione-disulfide reductase | Pseudomonas putida KT2440 Sphingobium sp. SYK-6 | IPR023753 IPR004099 | 29/450 39/450 | WP_010953139 WP_014076796 | / |
Chr_1236 | sodA | Superoxide dismutase | Pseudomonas putida KT2440 Sphingobacterium sp. T2 | IPR019831 IPR019832 | 57/205 52/205 | AAN66571 WP_231561313 | Benzoic acid /vanillin/catechin |
Chr_1594 | / | Quinone oxidoreductase | Pseudomonas putida KT2440 Sphingobium sp. SYK-6 | IPR013154 IPR013149 IPR020843 | 30/326 31/326 | WP_010951478 WP_014077905 | / |
Chr_2803 | ssuD | Alkanesulfonate monooxygenase | Pseudomonas putida KT2440 | IPR011251 | 80/381 | WP_003255833 | / |
Chr_3132 | katE | Catalase | Pseudomonas putida KT2440 Streptomyces sp. UNC401CLCol | IPR010582 IPR011614 | 41/754 42/754 | WP_010951777 WP_028959332 | / |
Chr_3182 | gloA | Lactoylglutathione lyase | Pseudomonas putida KT2440 | IPR004360 IPR037523 | 34/135 | WP_010954597 | / |
Chr_3330 | ssuD | Alkanesulfonate monooxygenase | Pseudomonas putida KT2440 | IPR011251 | 62/388 | WP_003255833 | / |
Chr_3467 | / | Catalase | Pseudomonas putida KT2440 Streptomyces sp. UNC401CLCol | IPR010582 IPR011614 | 53/489 52/489 | WP_010951777 WP_028959332 | / |
Chr_3587 | / | Manganese catalase | Sphingobium sp. SYK-6 | IPR039377 | 66/305 | WP_014075027 | / |
Chr_4287 | / | Catalase | Pseudomonas putida KT2440 Streptomyces sp. UNC401CLCol | IPR010582 IPR011614 | 60/479 55/479 | WP_010951777 WP_028959332 | / |