Multi-omics analysis reveals novel loci and a candidate regulatory gene of unsaturated fatty acids in soybean (Glycine max (L.) Merr)

Zhao, Xunchao; Zhan, Yuhang; Li, Kaiming; Zhang, Yan; Zhou, Changjun; Yuan, Ming; Liu, Miao; Li, Yongguang; Zuo, Peng; Han, Yingpeng; Zhao, Xue

doi:10.1186/s13068-024-02489-2

Biotechnology for Biofuels and Bioproducts

Table 3 Significant/suggested QEIs for soybean unsaturated fatty acid content in three environments detected using the QTN-by-environment detection model in 3VmrMLM

From: Multi-omics analysis reveals novel loci and a candidate regulatory gene of unsaturated fatty acids in soybean (Glycine max (L.) Merr)

Trait	SNP	Chr	Position (bp)	LOD (QE)	add* env1	dom* env1	add* env2	dom* env2	add* env3	dom* env3	variance	r² (%)	p-value	Known QTL	References
Oleic	rs6528670	7	6528670	11.36	0.58	− 4.19	0.08	0.21	− 0.66	3.97	0.43	4.71	1.10E−10
Oleic	rs1902760	8	1902760	13.68	0.66	4.37	− 0.45	0.46	− 0.22	− 4.83	0.55	6.09	6.70E−13
Oleic	rs4633292	9	4633292	5.72	0.01	0.19	0.53	− 1.73	− 0.54	1.55	0.21	2.31	2.60E−05
Oleic	rs39216169	17	39216169	11.67	0.20		0.69		− 0.89		0.44	4.82	2.10E−12
Oleic	rs31881460	19	31881460	17.04	− 0.52	− 0.57	− 0.63	− 0.33	1.15	0.91	0.66	7.32	3.60E−16
Oleic	rs44492166	19	44492166	30.20	− 1.49		0.18		1.31		1.33	14.67	6.30E−31
Linoleic	rs12727785	5	12727785	11.91	− 0.82	− 0.76	0.04	1.00	0.78	− 0.24	0.43	6.28	3.40E−11
Linoleic	rs14264702	7	14264702	11.60	0.04		− 0.78		0.74		0.39	5.68	2.40E−12	Seed oleic 6–7	[22]
Linoleic	rs34595703	13	34595703	14.71	− 0.94	0.03	0.08	− 0.16	0.86	0.13	0.54	7.87	6.80E−14	Seed oleic 6–4	[22]
Linoleic	rs2457629	14	2457629	10.39	0.25		0.56		− 0.81		0.35	5.09	4.10E−11
Linoleic	rs44492166	19	44492166	22.99	1.17		− 0.05		− 1.12		0.87	12.75	1.01E−23	Seed linoleic 2–2; Seed linolenic 2–3	[26]
Linolenic	rs8152225	1	8152225	26.67	0.39	0.39	0.23	0.12	− 0.61	− 0.51	0.19	10.79	1.30E−25
Linolenic	rs23852645	2	23852645	16.14	− 0.10	0.98	− 0.33	− 1.08	0.43	0.11	0.11	6.04	2.70E−15	Seed linoleic 7–1	[25]
Linolenic	rs4406682	3	4406682	5.22	− 0.24		0.04		0.21		0.03	2.01	6.09E−06
Linolenic	rs2988645	6	2988645	5.95	− 0.03	2.02	− 0.07	0.16	0.10	− 2.17	0.04	2.21	1.60E−05
Linolenic	rs1701848	14	1701848	17.78	− 0.40		− 0.05		0.45		0.12	7.09	1.60E−18
Linolenic	rs26951255	14	26951255	19.22	0.35	− 1.22	0.13	1.19	− 0.48	0.03	0.13	7.64	2.70E−18	Seed linolenic 10–1; Seed linolenic 7–6	[22]
Linolenic	rs42367957	18	42367957	8.55	− 0.09	− 1.31	0.00	− 0.79	0.10	2.10	0.05	3.06	5.80E−08
Linolenic	rs48948953	18	48948953	15.02	0.11		− 0.43		0.32		0.10	5.60	9.60E−16

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