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Table 4 Quantitative comparison of transcriptomic and proteomic analyses *

From: Integrated OMICS guided engineering of biofuel butanol-tolerance in photosynthetic Synechocystissp. PCC 6803

Gene ID

Transcriptomics analysis (fold change)

Proteomics analysis (fold change)

Description

 

Butanol vs. Control at 24 h

Butanol vs. Control at 48 h

Butanol vs.Control at 72 h

Butanol vs.Control at 24 h

Butanol vs.Control at 48 h

 

sll0135

1.64

1.61

2.51

 

2.42

5′-methylthioadenosine phosphorylase

slr1390

1.83

1.62

2.74

 

1.52

Cell division protein FtsH

sll1796

3.70

2.38

9.75

3.80

2.91

Cytochrome C553

slr0093

2.61

1.53

2.61

 

1.93

DnaJ protein

slr1330

3.18

2.11

5.69

1.86

 

F0F1 ATP synthase subunit epsilon

slr1828

3.38

3.33

11.00

2.09

1.66

ferredoxin

sll0248

3.60

3.67

1.86

1.59

6.26

Flavodoxin FldA

sll0335

1.64

4.33

1.75

 

1.52

Hypothetical protein

sll0470

4.27

1.55

2.84

 

1.67

Hypothetical protein

sll1618

1.63

2.71

1.86

1.53

1.67

Hypothetical protein

sll1895

2.23

1.69

2.31

 

1.59

Hypothetical protein

slr0643

2.13

1.69

2.25

1.52

1.88

Hypothetical protein

slr1046

1.86

1.75

1.50

1.57

 

Hypothetical protein

ssl0242

2.63

2.53

2.47

1.79

1.66

Hypothetical protein

ssl0352

2.30

2.60

6.33

1.62

1.84

Hypothetical protein

sll0689

2.21

1.63

3.28

1.70

1.93

Na/H + antiporter

slr1755

1.97

1.85

3.44

1.56

 

NAD(P)H-dependent glycerol-3-phosphate dehydrogenase

  1. * Proteomics data from Tian et al., (2012), in which only proteomes at 24 and 48 h were measured. The fold changes of proteomics data are average of replicates.
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