Integrated lipase production and in situ biodiesel synthesis in a recombinant Pichia pastoris yeast: an efficient dual biocatalytic system composed of cell free enzymes and whole cell catalysts

Expression of lipase in recombinant P. pastoris yeast

P. pastoris yeast has been shown to be a highly efficient system for secreted expression of various heterologous lipases [13]. In these expression systems, extracellular lipases have been intensively investigated. However, little attention has been paid to the portion of lipases remaining inside yeast cells, leaving an important question to be answered: how much catalytic capacity is discarded during typical preparation of lipase products only using extracellular enzymes?

To answer this question, we determined the olive oil hydrolyzing activity of extracellular and intracellular lipases. As expected, the majority of functional Tll enzymes were detected in the supernatant of fermentation culture, with the highest extracellular lipase production reaching 46 U/ml at 60 h (Figure 2). Interestingly, intracellular lipases in the form of whole cell catalysts displayed activity ranging from 0.08 to 0.16 U/mg dry cell weight (DCW) between 36 and 108 h. This result clearly indicated that not all lipases were secreted under the guidance of α-factor signal peptide, probably due to the limited capacity of the secretory machinery of P. pastoris relative to the high amount of overexpressed Tll. Therefore, the cost for biodiesel production using lipases could be further lowered by taking advantage of the otherwise abandoned intracellular lipase activity.

Determination of the activity of extracellular and intracellular T. lanuginosus lipase for biodiesel formation

Concurrent transesterification-esterification methanolysis and stepwise hydrolysis-esterification are the two major processes for lipase-mediated biodiesel production (Figure 3A, B) [15–20]. Lipase-catalyzed esterification of FFAs is likely to be more efficient than direct transesterification of triglycerides because three acyl groups tethered to the glycerol backbone may cause steric hindrance for enzyme access [21]. Thus, the two-step process consisting of hydrolysis of triglycerides to form FFAs and esterification of the released FFAs (and the pre-containing high content FFAs in WCOs) to generate FAMEs might be more productive than the concurrent esterification and transesterification regarding biodiesel synthesis. To test this hypothesis, we compared these two processes for biodiesel production using separated individual forms (in this section) and in the integrated manner (see the next two sections).

Specifically, the 60 h post-induction supernatant containing 46 U/ml extracellular lipases and corresponding cell pellet with the olive oil hydrolytic activity of 0.12 U/mg DCW (Figure 2) were separated by centrifugation, and used as the liquid cell free lipases and the whole cell lipases for bioconversion of WCOs into biodiesel, respectively. In the concurrent transesterification-esterification methanolysis, the liquid enzymes were able to catalyze biodiesel production with a 47% yield. By contrast, the whole cell catalysts intracellularly maintaining a small portion of lipases afforded a 7% biodiesel yield (Figure 3C). In the stepwise hydrolysis followed by esterification, the liquid cell free lipases and the whole cell lipases gave 56% and 15% biodiesel yields, respectively (Figure 3C). These results not only demonstrate that the stepwise hydrolysis-esterification is more efficient for biodiesel synthesis than the concurrent transesterification-esterification, but also suggest that the intracellular lipases, despite their lower activity, should not be neglected for biodiesel production.

Integrated biodiesel production via concurrent transesterification and esterification

During routine lipase fermentation, starting from logarithmic phase, 0.5% (v/v, methanol volume relative to culture volume) methanol was added every 12 h as an expression inducer and sole carbon source for induced expression of lipase and growth of P. pastoris yeast. In the integrated biodiesel production in this study, Tll-catalyzed in situ synthesis of biodiesel was initiated by addition of 10 g WCOs and 2% methanol at 36 h, after which 2% methanol was supplemented an additional three times at 48 h, 60 h, and 72 h, leading to the final 1:3 molar ratio between WCOs and methanol. In addition to being the inducer and carbon source (0.5%, theoretically), extra methanol (1.5%) acted as a reactant for esterification of high content FFAs and transesterification of triglycerides in WCOs. Under this concurrent esterified-transesterified methanolysis, catalyzed in situ by both extracellular and intracellular lipases, 58% biodiesel yield was achieved after 60 h reactions (from 36 to 96 h). In the meantime, the FFA content decreased from 19% to 1.2% (Figure 3D). In comparison, separated extracellular and intracellular lipases catalyzed biodiesel formation with yields of 47% and 7% (Figure 3C), respectively. These results clearly indicate that integrated biodiesel production is more efficient than typical biodiesel preparation that uses only secreted lipases. Elimination of the enzyme isolation step also significantly lowers the cost for biodiesel production.

Integrated biodiesel production via stepwise hydrolysis followed by esterification

In stepwise hydrolysis followed by esterification, 10 g WCOs were added into the induced lipase fermentation culture at 36 h, without supplementation of extra methanol, to initiate only the hydrolysis of triglycerides by Tll. In 12 h hydrolytic reactions, the FFA content went up to 93% from 19%, demonstrating highly effective hydrolysis catalyzed by Tll lipases. It should be noted that phosphate buffer present in the buffered methanol-complex medium (BMMY) was able to balance the decreased pH resulted from released FFAs, thus the pH did not affect the catalytic performance. Subsequently, 2% methanol was added every 12 h from 48 to 84 h to allow esterification of released FFAs. At 96 h, a 72% biodiesel yield was achieved, along with an FFA content decreased to 6% (Figure 3E). Considering that 93% FFAs decreased to 6% but the biodiesel yield was only 72%, the residual 15% FFAs could have been reassembled to glycerol backbone.

Because the total amount of methanol and the reaction time were kept the same in the concurrent transesterification-esterification and the stepwise hydrolysis followed by esterification, we reason that the varied biodiesel yield can be attributed to different reaction processes resulting from the distinct time points for the addition of the reactant methanol. The latter strategy was more effective for in situ integrated synthesis of biodiesel than the former (72% versus 58%). In addition to different reaction types (transesterification-esterification versus hydrolysis-esterification), the cell permeability of substrates (acylglycerides versus FFAs) might be another important factor leading to the varied biodiesel yield. Given that FFAs with smaller molecular size could more easily penetrate the cell membranes than larger glycerides, stepwise hydrolysis-esterification would allow more substrates to contact intracellular lipases, consequently giving a higher biodiesel yield than concurrent transesterification and esterification (Additional file 1).

Effect of water content on integrated biodiesel production via stepwise hydrolysis followed by esterification

For recombinant protein production by the methanol utilization plus P. pastoris strain, 25 ml buffered complex glycerol medium (BMGY) followed by 100 to 200 ml BMMY medium was generally used in shaking flask fermentation [14]. For the P. pastoris integrated biodiesel production system under the stepwise hydrolysis-esterification strategy, the water present in this system is used as a reactant for hydrolysis of triglycerides. However, too much water drives the equilibrium of the reaction towards hydrolysis, not esterification of FFAs [22]. To determine a favorable water content for biodiesel production, the water ratio was controlled by adjusting the BMMY medium volume (25, 50, 75, and 100 ml) to balance the above two aspects. As a result, the highest 72% biodiesel yield was achieved in the lowest volume (25 ml) reaction system (Figure 4A). This suggests that the water content in the integrated system should be limited at a low level provided that the cell growth and hydrolysis of triglycerides is not negatively affected. It should be noted that 25 ml was almost the lowest volume limit of BMMY medium; a lower volume was not viable for cell growth, enzyme expression, and triglyceride hydrolysis because no free water remained during the cultivation process.

After a 4 to 5 d cultivation and biotransformation process, the volume of pre-loaded 25 ml BMMY medium in a 500 ml flask drastically reduced through evaporation. Nonetheless, it was estimated that this integrated biodiesel production system contained 50% to 100% water relative to oil content. In previous immobilized enzyme- or whole cell lipase-based biodiesel production systems [22, 23], water content was generally limited to very low level (<3%) to achieve satisfactory biodiesel yield through the addition of anhydrous molecular sieves or silica gels as water absorbent agents. The significantly enhanced water tolerance of this integrated system could significantly simplify the operation process and further reduce costs.

Effect of methanol concentration on integrated biodiesel production via stepwise hydrolysis followed by esterification and reusability of this integrated system

Esterification involved in FAME production is an equilibrium reaction. Improving the methanol concentration drives this equilibrium towards FAME formation. However, a high concentration of methanol could deactivate lipases and deteriorate yeast cell growth in the integrated biodiesel production. Thus, the optimum methanol concentration is a compromise between minimizing lipase deactivation and maximizing the equilibrium balance towards FAME synthesis. The increased volume of water in the in situ reaction system allows more methanol to be present due to miscibility and prevention of insoluble methanol droplets, thereby reducing the deactivation of lipase by methanol droplets and hence facilitating biodiesel production. Also, for the intracellular lipase in the form of whole cell catalysts, the cell wall and membrane can provide a protective environment for lipases.

In this simultaneous lipase production and FAME synthesis system, we compared 8%, 14%, and 20% total methanol, corresponding to 3:1, 6:1, and 9:1 molar ratio to WCOs. To alleviate lipase deactivation and toxicity toward yeast cells, stepwise addition of methanol was adopted. Specifically, these varied amounts of total methanol were supplemented four times (that is, with 2%, 3.5%, or 5% methanol each time), every 12 h.

As shown in Figure 4B, 72%, 87%, and 41% biodiesel yield was achieved when 8%, 14%, and 20% total methanol was involved in biodiesel synthesis in situ, respectively. The highest biodiesel yield was derived using a ratio of 6:1 (methanol:oil), demonstrating better methanol tolerance in this integrated system than in other previous biocatalytic systems (generally 3:1 to 4:1) based on immobilized enzymes or whole cell catalysts [22, 23]. Further increase of the amount of methanol (9:1) did not improve biodiesel production, likely because of the significant loss of lipase activity. Using P. pastoris whole cell catalysts with intracellular expression of the same Tll lipase with a lower water (5%) and methanol content (molar ratio of 4:1) in a solvent-free system resulted in a biodiesel yield of 82% [10]. By comparison, this integrated system, resisting higher contents of water and methanol (6:1), resulted in a higher biodiesel yield (87%). This could be attributed both to easily accessible extracellular lipase with high activity and the use of intracellular lipase in the form of whole cells for catalysis of biodiesel production.

Our investigation on the reusability of this integrated system showed 73%, 66%, and 61% relative biodiesel yield in three successive batches, respectively. The reusability of this integrated system is not as good as conventional immobilized enzyme or whole cell systems, because cell free extracellular enzymes in aqueous phase cannot be fully recovered as compared to immobilized particles or whole cells. We think the activity loss mainly comes from partial recovery, not lipase deactivation. However, the integrated system possesses a significant advantage in the overall cost of biodiesel production. Considering the savings on energy, and the cost for lipase immobilization or whole cell biocatalyst preparation versus traditional biodiesel production using separately prepared lipases, the in situ biodiesel synthesis process could reduce overall costs by approximately one-fourth compared with the conventional immobilized enzyme system.

Plasmid, strains, media, and reagents

The yeast host strain P. pastoris X33 and the plasmid pPICZαA were products of Invitrogen (Carlsbad, CA, USA). WCOs (FFA content of 19%, acid value of 170 mg KOH/g, saponification value of 366 mg KOH/g, density of 0.89 g/cm³, water content of 0.1%) were kindly donated by Lvming Environmental Protection Technology Co., Ltd. (Shanghai, China). n-hexadecane and authentic standards of FAMEs were purchased from Sigma-Aldrich (St. Louis, MO). The media including yeast extract peptone dextrose medium (YPDS), BMGY, BMMY, and low-salt lysogeny broth used in this study were prepared by following the manual of EasySelect™ Pichia Expression Kit (Invitrogen).

Plasmid and recombinant strain construction

The codon optimized tll gene [GenBank:AF054513.1] was synthesized by GenScript Corporation and used as a PCR template. The primers (forward, Eco RI: 5′-CCGGAATTC TCACCTATCAGAAGAGAAGTTTCAC-3′ (the bold bases represent the Eco RI cutting site); (reverse, Not I: 5′-AAGGAA AAAAGCGGCCGC CTAATGATGATGATGATGATGCAAGCAAGTTCCGATAAG-3′ (the bold nucleotides indicate the Not I restriction site)) were used to amplify the tll gene fused with an artificial sequence encoding a His₆-tag at the C-terminus of Tll lipase. The Eco RI and Not I double-digested tll fragment was inserted into the Eco RI/Not I pretreated pPICZαA, and the resultant pPICZαA-tll was transformed into E. coli DH5α competent cells. The sub-cloned tll sequence and its in-frame fusion with the α factor signal peptide was confirmed by DNA sequencing of the plasmids isolated from transformants grown on low-salt lysogeny broth medium containing 25 μg/ml zeocin. Then, pPICZαA-tll was linearized by Sac I and transformed into competent cells of P. pastoris X33 via electroporation. The positive transformants harboring chromosomal integration of Tll expression cassettes were preliminarily selected on YPDS plates supplemented with 100 μg/ml zeocin. Multi-copy integrated transformants were further screened on YPDS plates containing 2,000 μg/ml of zeocin.

Expression of recombinant lipase

A single colony of P. pastoris harboring multi-copy Tll expression cassettes was used to inoculate 25 ml BMGY in a 500 ml baffled flask. Yeast cells were grown at 28°C, 250 rpm until optical cell density at a wavelength of 600 nm reaching 4 to 6. The cells were pelleted by centrifugation at room temperature under sterile conditions and re-suspended in a 500 ml baffled flask pre-loaded with 25 ml fresh BMMY medium (50 ml, 75 ml, or 100 ml). We added 0.5% (v/v) methanol every 12 h for induction of lipase expression. The strain containing empty vector pPICZαA was used as reference for the expression analysis.

Measurement of cell free enzyme and whole cell activity

At designated time intervals, supernatant and cell pellet from 1 ml induced culture broth were separated by centrifugation, and used for measuring the hydrolytic activity of cell free enzymes and whole cell catalysts, respectively. The hydrolysis reactions using emulsified olive oil as the substrate were performed as previously described by Yan et al. [14], except that the reaction temperature was set at 40°C. The inactivated lipases in the form of cell free enzymes and whole cell catalysts were prepared by boiling samples at 100°C for 1 h and used as controls. One unit of lipase activity was defined as the amount of enzyme in 1 milliliter of supernatant or in 1 milligram of dry cells that hydrolyzes olive oil to form 1 μmol FFA per minute under testing conditions. Activity of cell free enzymes was presented as units of enzyme activity possessed by one milliliter of supernatant (U/ml). Activity of whole cell catalysts was calculated as units of enzyme activity possessed by one milligram of dry cell weight (U/mg DCW).

Integrated lipase production and in situ biotransformation of waste cooking oils into biodiesel

At the post-induction time of 36 h (hereafter, unless otherwise specified, all times indicate post-induction time), 10 g WCOs were added into lipase-producing P. pastoris culture. In concurrent transesterification-esterification methanolysis, 2%, 3.5%, or 5% (v/v, methanol volume relative to culture volume) methanol was added at 36 h, 48 h, 60 h, and 72 h four times, resulting in the final molar ratio of WCOs to methanol at 1:3, 1:6, or 1:9, respectively. In the case of hydrolysis followed by esterification, 2%, 3.5%, or 5% (v/v) methanol was added at 48 h, 60 h, 72 h, and 84 h four times, allowing an extra 12 h for lipase-catalyzed hydrolysis in the absence of methanol. These in situ reactions were performed at 30°C and 250 rpm. The yeast cells harboring empty vector were subjected to the same expression procedure and reaction conditions were used as control.

For investigating reusability of this integrated system, the water layer containing extracellular enzymes and whole cells retaining intracellular enzymes were recovered by removing upper layer of FAMEs and residual oils. Glycerol adsorbed on whole cells was removed via washing. The recovered biocatalysts were applied into a new batch of biodiesel synthesis.

Quantitative measurement of fatty acid methyl esters and free fatty acids

At certain time intervals, a 100 μl aliquot was withdrawn from the in situ reaction system and mixed with 100 μl deionized water, then centrifuged for 10 min at 11,000 × g. A 5 μl top layer was mixed with 995 μl n-hexane containing 1 mM n-hexadecane (internal standard) to prepare samples. A 1 μl sample was injected into Agilent 7890A GC system equipped with flame-ionization detector and a capillary column (INNOWAX, Agilent, Santa Clara, CA, 30 m × 0.25 mm × 0.25 μm) for FAME analysis. The gas chromatography oven was heated from 150°C to 260°C at a rate of 5°C/min, and kept at 260°C for 5 min. The injector and detector temperatures were 240°C and 280°C, respectively. The FAME content was quantified using the internal standard as reference, and calculated as percentage biodiesel yield relative to theoretical yield by following the previous report [11]. For measurement of FFA content, FFAs within a 100 μl oil phase in the reaction mixture were titrated by 50 mM NaOH using an autotitrator (ET 18, Mettler Toledo, Greifensee, Switzerland).