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Table 1 Cellulosomal and non-cellulosomal carbohydrate-active enzymes showing significant temporal dynamics

From: Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass

Locus tag Protein name Protein function 19 h 43 h 91 h 187 h p value (<0.05) Cluster
Non-catalytic cellulosomal proteins
 Cthe_3079 Orf2p Cellulosome anchoring protein, cohesin region 5.18 5.57 6.46 6.99 2.27E−05 C4
 Cthe_0452 OlpC Cellulosome anchoring protein, cohesin region 2.32 –1.06 –0.76 –0.58 1.41E−04 C2
 Cthe_3077 CipA Cellulosome anchoring protein, cohesin region 9.61 9.81 10.14 10.6 5.32E−04 C4
 Cthe_3080 OlpA Cellulosome anchoring protein, cohesin region 5.73 6.51 7.17 7.44 4.01E−03 C4
 Cthe_1307 SdbA Cellulosome anchoring protein, cohesin region 4.92 4.06 4.08 3.84 8.68E−03 C2
 Cthe_3078 OlpB Cellulosome anchoring protein, cohesin region 7.4 7.66 8.17 8.02 1.24E−02 C4
Cellulosomal cellulase genes
 Cthe_0044 CseP Cellulosome enzyme, dockerin type I –1.94 –2.12 0.12 2.68 4.69E−04 C3
 Cthe_2972 XynA Glycoside hydrolase, family 11 3.96 4.44 5.74 6.71 4.86E−04 C3
 Cthe_0912 XynY Glycoside hydrolase, family 10 –1.36 –3.06 0.54 1.98 5.88E−04 C3
 Cthe_3132 Cthe_3132 Cellulosome enzyme, dockerin type I –1.56 0.49 1.92 2.88 6.80E−04 C3
 Cthe_1963 XynZ Glycoside hydrolase, family 10 2.39 2.63 3.75 4.73 9.20E−04 C3
 Cthe_2147 CelO Glycoside hydrolase, family 5 –2.25 −2.4 0.81 1.54 2.05E−03 C3
 Cthe_0239 Cthe_0239 Cellulosome enzyme, dockerin type I 1.43 1.82 2.7 3.56 2.10E−03 C3
 Cthe_0745 CelW Glycoside hydrolase, family 9 0.23 1.11 2.14 2.16 2.47E−03 C3
 Cthe_1472 CelH Carbohydrate binding family 11 –0.69 –2.18 0.23 1.32 3.22E−03 C3
 Cthe_0797 CelE Glycoside hydrolase, family 5 2.46 2.4 3.05 3.91 9.96E−03 C4
 Cthe_2590 XynD Glycoside hydrolase, family 10 −0.6 –0.27 1.7 2.65 1.06E−02 C3
 Cthe_3141 Cthe_3141 Lipolytic enzyme, G-D-S-L 0.14 –0.36 1.96 2.58 1.12E−02 C3
 Cthe_0433 Cthe_0433 Glycoside hydrolase, family 9 2.41 1.08 2.63 3.49 1.41E−02 C4
 Cthe_0043 CelN Glycoside hydrolase, family 9 1.37 1.64 2.35 2.91 1.55E−02 C4
 Cthe_1806 Cthe_1806 Cellulosome enzyme, dockerin type I 1.55 1.1 2.22 2.8 1.81E−02 C4
 Cthe_0625 CelQ Glycoside hydrolase, family 9 2.5 1.46 2.29 2.43 1.93E−02 C4
 Cthe_0274 CelP Glycoside hydrolase, family 9 1.59 1.88 2.68 3.11 2.68E−02 C3
 Cthe_0190 Cthe_0190 Proteinase inhibitor I4, serpin 1.47 2.05 3.57 4.36 3.15E−02 C3
 Cthe_0258 Doc258 Cellulosome enzyme, dockerin type I 2.58 2.29 3.52 3.82 3.92E−02 C4
Free enzyme system
 Cthe_2809 LicA Glycoside hydrolase, family 16 3.53 4.03 4.9 5.32 8.76E−04 C4
 Cthe_1471 Cthe_1471 Glycoside hydrolase, family 5 −2 –0.29 –0.94 1.31 1.45E−02 C3
 Cthe_1256 bglB Glycoside hydrolase, family 3-like protein 1.5 3.17 2.46 2.17 2.11E−02 C4
 Cthe_3063 Cthe_3063 Acetyl xylan esterase –1.18 –1.36 –1.09 0.71 2.63E−02 C4
 Cthe_2989 Cdp Glycosyltransferase 36 2.95 3.61 3.42 3.29 3.87E−02 C4
  1. The values at the different time points are log2 (NSAF) values
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Biotechnology for Biofuels

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