Skip to main content

Bioflocculants’ production in a biomass-degrading bacterium using untreated corn stover as carbon source and use of bioflocculants for microalgae harvest



Bioflocculation has been developed as a cost-effective and environment-friendly method to harvest multiple microalgae. However, the high production cost of bioflocculants makes it difficult to scale up. In the current study, low-cost bioflocculants were produced from untreated corn stover by a biomass-degrading bacterium Pseudomonas sp. GO2.


Pseudomonas sp. GO2 showed excellent production ability of bioflocculants through directly hydrolyzing various biomasses. The untreated corn stover was selected as carbon source for bioflocculants’ production due to its highest flocculating efficiency compared to that when using other biomasses as carbon source. The effects of fermentation parameters on bioflocculants’ production were optimized via response surface methodology. According to the optimal model, an ideal flocculating efficiency of 99.8% was obtained with the fermentation time of 130.46 h, initial pH of 7.46, and biomass content of 0.64%. The relative importance of carboxymethyl cellulase and xylanase accounted for 51.8% in the process of bioflocculants’ production by boosted regression tree analysis, further indicating that the bioflocculants were mainly from the hydrolysates of biomass. Biochemical analysis showed that it contained 59.0% polysaccharides with uronic acid (34.2%), 32.1% protein, and 6.1% nucleic acid in the bioflocculants, which had an average molecular weight as 1.33 × 106 Da. In addition, the bioflocculants showed the highest flocculating efficiency at a concentration of 12.5 mg L−1 and were stable over broad ranges of pH and temperature. The highest flocculating efficiencies obtained for Chlorella zofingiensis and Neochloris oleoabundans were 77.9 and 88.9%, respectively.


The results indicated that Pseudomonas sp. GO2 can directly utilize various untreated lignocellulolytic biomasses to produce low-cost bioflocculants, which showed the high efficiency to harvest two green microalgae in a low GO2 fermentation broth/algal culture ratio.


Owing to the enormous demand for energy and the shortage of traditional fossil fuels, renewable and sustainable fuels have received increasing attention to alleviate dependence on the fossil fuels. Microalgae have been considered as promising renewable feedstocks owing to their fast growth rate, high lipid accumulation as well as non-competition with food supply [1, 2]. Although biofuel production from microalgae has been widely researched in the last few decades, it is still hindered by high production costs, which mainly comes from the processes of cultivation, harvest, drying, lipid extraction, and transesterification [3, 4]. The harvest of algae, which usually accounts for more than 30% of total costs, has been one of the biggest challenges in the process of algal biofuel production [5, 6]. Furthermore, costs may increase according to the size of microalgal cells, the density of the algal culture, and the intensity of negative charge on the surface of algae [7]. Therefore, an economic and effective method is urgently necessary for algal harvesting to reduce total costs [5].

A variety of methods, such as centrifugation [8], filtration [9], ultrafiltration [10], sedimentation [5], and flotation [11], have been used to harvest algal cells. However, high-capital equipment and operational costs, high energy consumption, or heavy dependence on algal species have hampered large-scale commercialization of these microalgal harvesting methods [5, 12]. The harvest of microalgae through flocculation, which can form heavy aggregates by neutralizing the algal surface’s negative charges using various flocculants and thus increase the rate of settling [13], has been proposed as the most reliable and suitable harvesting method for multiple algae species, even at low biomass concentrations [6, 14]. Flocculation induced by chemicals, including inorganic and organic chemicals, has been used for the effective harvest of various microalgal strains. However, inorganic flocculants are toxic and have negative effects on algal viability, thus limiting algal recycling and reuse [15]. Moreover, most organic flocculants are mainly derived from fossil fuels or edible crops, which may further aggravate the problems of fossil fuel and food shortages, and associated environmental risks [5, 16].

Bioflocculants’ production by bacteria in nature has been suggested as a cost-effective and environment-friendly method of producing flocculants to effectively harvest multiple algae [17, 18]. These bioflocculants mainly consisted of polysaccharides, proteins, and nucleic acids [19]. Some bacterial species like Bacillus sp. [20], Rhodococcus sp. [21], Solibacillus sp. [22], Arthrobacter sp. [23], and Pseudomonas sp. [24] have been reported to produce bioflocculants, and applied to harvest algae. However, for commercial-scale bioflocculants’ production from bacteria, large amounts of nutrients and sugars are required [18, 24]. To minimize the production cost, various wastewaters and hydrolysates of agricultural waters have been successfully used for bacterial growth and bioflocculants’ production [24, 25]. Recently, some lignocellulolytic enzyme-producing bacteria have been found to possess the ability to produce bioflocculants through directly utilizing untreated renewable lignocellulosic biomass. Liu et al. [18] reported that Cellulosimicrobium cellulans L804 can produce bioflocculants from untreated corn stover by secreting CMCase and xylanase. Bioflocculants produced by Bacillus agaradhaerens C9 using untreated rice bran have been shown to be highly efficient in harvesting algae [26]. Here, a novel biomass-degrading bacterium isolated from paper mill sludge showed efficient bioflocculants’ production using various untreated lignocellulosic biomasses as carbon source. Then, the bioflocculants’ production conditions were further optimized via response surface methodology (RSM) and evaluated by boosted regression tree (BRT) analysis. In addition, their flocculating properties and applications in two types of microalgal harvesting were also evaluated in this study.

Results and discussion

Evaluating the biomass degradation ability of GO2

One isolate, GO2, which could produce bioflocculants by directly degrading various untreated biomasses, was isolated from paper mill sludge and finally identified as Pseudomonas sp. according to the morphological and phylogenetic characteristics of this strain, as well as the sequence of 16S rRNA (Additional file 1: Fig. S1). The sequence has been submitted to NCBI (, and the accession number was given as MF448527. The biomass hydrolysis ability of this strain was evaluated by Gram’s iodine staining on plates using different lignocellulolytic biomasses as the sole carbon source (Fig. 1). Gram’s iodine staining has been regarded as an economic, fast, and environmentally friendly qualitative method for evaluating the hydrolysis ability of microorganisms on an agar plate [27]. Gram’s iodine forms a bluish-black compound with carbohydrate polymers but not with their hydrolysates (Halo region). In this study, the strain GO2 produced an obvious halo region with the halo diameters ranging from 2.4 to 2.9 cm in the agar plate containing untreated agave, corn stover, Miscanthus, wheat bran, and wood dust (Fig. 1). In addition, similar halo regions can be formed with the halo diameters of 2.8 and 2.7 cm in the agar plates containing CMC and xylan, respectively, indicating the strain GO2 was capable of degrading the biomass through secreting CMCase and xylanase [28, 29]. A number of Pseudomonas strains have been reported to produce various extracellular lignocellulolytic enzymes, which showed excellent ability to hydrolyze various lignocellulosic feedstocks [30, 31].

Fig. 1
figure 1

Evaluation of the hydrolysis ability of Pseudomonas sp. GO2 using different biomass, CMC, or xylan as carbon source by Gram’s iodine staining. The yellow plaque in the center of plate indicates the bacterial size, and the halo region indicates that carbohydrate polymers are hydrolyzed. The halo diameter is shown by matrix plot. Bar = 1 cm

Selecting the best lignocellulose biomass for bioflocculants’ production

Lignocellulose biomass, which is mainly made up of complex carbohydrate polymers including cellulose, hemicellulose, and lignin, has been widely used for the production of biofuels and other biomass-derived value-added chemicals and bioproducts [32, 33]. In this study, four main lignocellulose biomasses including agave, corn stover, Miscanthus, and wheat bran were selected to evaluate the bioflocculants’ production ability using the biomass-degrading strain Pseudomonas sp. GO2. The maximum flocculating efficiency with the value of 95.1% was obtained using 0.5% (w/v) corn stover after 120 h of fermentation, while the highest flocculating efficiencies were 95.0, 94.4, and 94.7% in the presence of 0.5% (w/v) agave, Miscanthus, and wheat bran, respectively, after 120–144 h of incubation (Fig. 2). Moreover, the maximum flocculating efficiency was only 23.5% after 48 h of fermentation in the absence of biomass (Data not shown), representing that the bioflocculant was primarily produced from the hydrolysates of lignocellulose biomass by Pseudomonas sp. GO2. The flocculating efficiency of GO2 induced by 0.5% untreated corn stover was almost always higher and more stable than that by other biomasses after 48–196 h of incubation (Fig. 2), and its maximum flocculating efficiency (95.1%) was significantly higher than that of Cellulosimicrobium cellulans L804 induced by 2.0% corn stover (90.9%) [18] and Bacillus agaradhaerens C9 produced by rice bran (87.2%) [26]. Therefore, untreated corn stover was selected as the best lignocellulose biomass candidate for bioflocculants’ production in the subsequent experiments.

Fig. 2
figure 2

Bioflocculants’ production by Pseudomonas sp. GO2 using 0.5% untreated agave, corn stover, Miscanthus, or wheat bran biomass as carbon source. Strain GO2 was cultured at 37 °C and 200 rpm for 8 days, and the supernatants were collected each day to measure the flocculating efficiency by means of kaolin clay as substrate. Data are the means of four replicates ± SE

Optimization of the bioflocculants’ production using GO2

The effects of incubation time, biomass content, and initial pH on flocculating efficiency of GO2 fermentation were optimized by RSM. Variance analysis (ANOVA) suggested that the model was significant because the F value of the model was 5.46, which stands for only a 0.7% probability to come up because of noise (Table 1). The correlation coefficient (R 2) was recorded up to 0.9390, which represented that the correlation of experimental and predicated values was significant in the model [21]. Moreover, the low “Pro > F” value (< 0.0500) demonstrated that the model terms were significant (Table 1). According to the optimal model, the fitted equation of flocculating efficiency during fermentation process is finally shown as follows:

$$\begin{aligned} {\text{Flocculating activity }} & = -\,97.74941 + 0.87408\,\left[ {\text{Time}} \right] + 49.61787\,\left[ {\text{Initial pH}} \right] \\ & \quad - 41.92902 \,\left[ {\text{Biomass content}} \right] - 0.059458 \, \left[ {\text{Time}} \right] \times \left[ {\text{Initial pH}} \right] \\ & \quad + 0.028872 \, \left[ {\text{Time}} \right] \times \left[ {\text{Biomass content}} \right] + 0.47619\,\left[ {\text{Initial pH}} \right] \\ & \quad \times \left[ {\text{Biomass content}} \right] - 1.28178 {\text{E}}{-}003\,\left[ {\text{Time}} \right]^{ 2} \\ & \quad - 3.35267\,\left[ {\text{Initial pH}} \right]^{ 2} + 6.03965\,\left[ {\text{Biomass content}} \right]^{ 2} \\ \end{aligned}$$
Table 1 ANOVA of the quadratic model coefficient of flocculating efficiency

As shown in Fig. 3, the flocculating efficiency can achieve an ideal level of 99.8% under the optimal conditions of fermentation time of 130.46 h, initial pH at 7.46, and biomass content at 0.64% (w/v). The flocculating efficiency was positively related to incubation time, but decreased slightly with further extension of culture time, possibly due to the limited growth of cells caused by consumption of various nutrients [34] and the production of proteases caused by cell lysis [35]. Moreover, it seemed that the biomass content negatively affected the increase of flocculating efficiency, and the initial pH only showed a little influence on the bioflocculant production (Fig. 3). The high biomass content may markedly change the ratio of carbon and nitrogen, which played a crucial role in cell growth and bioflocculant production [21, 26]. High carbon/nitrogen ratio is beneficial to cell growth but decreases flocculating efficiency and the accumulation of bioflocculants. The low carbon/nitrogen ratio can maintain a stable pH of the culture medium, thus keeping an excellent flocculating efficiency [36, 37]. The excessive biomass content may refine oxygen transfer in the cultural medium, which affected the cell growth, enzymatic secretion, and bioflocculants’ production of bacteria [26]. In addition, excess nutrition caused by high biomass contents also leads to the decrease of flocculating efficiency [21].

Fig. 3
figure 3

Effects of fermentation time, initial pH, and biomass content on bioflocculants’ production using Pseudomonas sp. GO2 via RSM. The matrix included a total of 20 experiments, and all experiments were performed at 37 °C and 200 rpm. a Effects of fermentation time and initial pH. b Effects of fermentation time and biomass content. c Effects of initial pH and biomass content

To understand the relative importance of incubation time, CMCase activity, xylanase activity, biomass content, and initial pH on flocculating efficiency, a BRT modeling analysis, which combines with statistical and machine learning techniques [38], was performed. The selected model was fitted when learning rate was set as 0.001, tree complexity as 4, and bag fraction as 1.5. The model showed a training data correlation coefficient of 0.82 and a cross-validation correlation coefficient of 0.75, indicating that this model is significant [39, 40]. The relative importance analysis indicated that CMCase activity was the most important variable on flocculating efficiency (39.5%), followed by biomass content (26.0%), incubation time (20.2%), xylanase activity (12.3%), and initial pH (1.9%) (Fig. 4). The relative importance of CMCase and xylanase activity accounted for 51.8% of all variables, further indicating that the bioflocculants’ production of GO2 was mainly from the conversion of biomass by lignocellulosic enzymes [26]. The dependence plot of biomass content showed that flocculating efficiency was positively related when the biomass content was less than 2.5%, and the biomass content, which ranged from 2.5 to 4.0%, made almost no contribution to bioflocculants’ production (Fig. 4b). This was similar to that the low biomass content was beneficial to produce bioflocculants according to the RSM model (Fig. 3b). The flocculating efficiency was significantly increased after 108 h of incubation, which may mainly depend on the production of lignocellulosic enzymes and thereby release available substrates to produce bioflocculants [18, 41]. In addition, the model indicated that the optimal initial pH for flocculating efficiency ranged from 5.0 to 8.3, which is consistent with the initial pH close to neutralization leading to the highest flocculating rate [24, 42].

Fig. 4
figure 4

Partial dependence plots of the five predictor variables in the BRT model for bioflocculant production and their relative importance. a CMCase activity; b biomass content; c incubation time; d xylanase activity; e initial pH; f relative importance of the explanatory variables. Rug plots at the inside bottom of graph showed distribution of sample sites along that variable

Characteristics of the bioflocculants produced by GO2

The bioflocculants from GO2 consisted of 59.0% total polysaccharides, 32.1% protein, and 6.1% nucleic acid (Table 2). Our result was similar to the main compositions of bioflocculants secreted by other bacterial strains [18, 43]. Further analysis indicated that total polysaccharides contained 58.0% uronic acid. The higher contents of proteins and uronic acid in the bioflocculants can offer more carboxyl groups, which can increase the number of effective sites for particles’ adsorption [18, 44]. The maximum bioflocculants yield was 316 mg g−1 biomass when untreated corn stover was added into the medium. The viscosity of 1.0 g L−1 bioflocculants is 1.352 cPs, and the average molecular weight of these bioflocculants is 1.33 × 106 Da. In addition, the bioflocculants showed a negative zeta potential with the value of − 57.38 mV, and its charge density is − 1.007 meq g−1 bioflocculants (Table 2).

Table 2 The compositions and characteristics of the bioflocculants produced from 0.5% (w/v) untreated corn stover by Pseudomonas sp. GO2

To further verify that the functional groups existed in the bioflocculants, the spectra of the purified bioflocculants were measured in the 4000–600 cm−1 region (Additional file 1: Fig. S2). A big absorption band was found at 3275 cm−1, indicating the existence of hydroxyl and amine groups, and a weak C–H stretching of methyl, methylene, or methane group at 2928 cm−1 [45]. The absorption signals at 1630 and 1450 cm−1 are the typical characteristics of carboxyl groups, representing the presence of proteins and amino-sugars [13]. The absorption peak at 1045 cm−1 represents a C–O–C stretching vibration of ester linkage, and the weak peak at 881 cm−1 means β-glycosidic linkages between the sugar monomers, and it has been reported that the wave numbers between 1200 and 800 cm−1 are the main features of all sugar derivatives [46]. The results further confirmed that the bioflocculants predominantly consist of polysaccharides and proteins.

Effects of dosage, pH, temperature, and metal ions on flocculating activity

To determine the lowest amount of bioflocculants with the highest flocculating efficiency, a series of dosage concentrations ranging from 1.25 to 18.75 mg L−1 were selected to estimate the flocculating efficiency. The results showed the highest flocculating efficiency (94.7%) was obtained with a dosage of 12.5 mg L−1, and dosage concentrations of 8.75–17.5 mg L−1 resulted in more than 90% flocculating efficiency (Fig. 5a). Low dosage of bioflocculants usually led to inadequate bridging between particles, while higher bioflocculants concentrations increased the repulsion between particles because of the excessive import of negatively charged polysaccharides [18]. In addition, high dosage of bioflocculants caused the increase in the viscosity of solution, which can also inhibit the sedimentation of floccules [13]. The extracted bioflocculants showed an extensive pH range for flocculating kaolin clay (Fig. 5b). All measured pH values (3–13) achieved over 80% flocculating efficiency. pH values below 8 achieved more than 90% flocculating efficiency (Fig. 5b). pH affected the electronic states of the bioflocculants, thus influencing the flocculation efficiency [47]. The slight decrease in flocculation efficiency at pH 9 and 10 may be attributed to the weakening of the spatial charge arrangements of these bioflocculants under these pH conditions [43]. Moreover, the GO2 bioflocculants exhibited excellent characteristics of thermostability, with over 85% flocculating efficiency at all tested temperatures (4–80 °C). These are consistent with most polysaccharide-dependent bioflocculants being more stable than protein- and nucleic acid-dependent ones [48, 49]. The superior pH and temperature tolerance of these bioflocculants indicated they could have a wide variety of industrial uses regardless of the pH and temperature of the solutions, thus making them cost effective [43]. Furthermore, the flocculating efficiency was significantly enhanced by monovalent cations (Na+ and K+), bivalent cations (Ca2+ and Mg2+), and low concentration Al3+, while it was markedly inhibited by high concentration Al3+ and all tested Fe3+ concentrations (Fig. 6). Metal cations can stabilize and neutralize the residual negative charge formed by certain functional groups, and help to form the bridges between particles, thus improving flocculating efficiency [50]. The highest flocculating efficiency was obtained using 10 mg L−1 Ca2+ (Fig. 6b), which has been found to be the best cation stimulator for most bioflocculants [18, 19]. The poor flocculation in the presence of Fe3+ (Fig. 6c) may be due to the alteration of the surface charge and the decrease in adsorption sites of particles [43].

Fig. 5
figure 5

Effects of bioflocculant dosage, pH, and temperature on flocculating efficiency using kaolin clay suspension. a Dosage; b pH; c temperature. Data are the means of four replicates ± SE

Fig. 6
figure 6

Effects of various metal ions (0–15 mg L−1) on flocculating efficiency using kaolin clay suspension at pH 7.0 with the bioflocculant dosage of 12.5 mg L−1. a Monovalent cations (Na+ and K+); b bivalent cations (Ca2+ and Mg2+), and c trivalent cations (Al3+ and Fe3+). Data are the means of four replicates ± SE

Application of the bioflocculants GO2 in two green microalgal harvests

Green microalgae have been regarded as an emerging feedstock to produce biodiesel, but the commercialization of microalgal biofuel production has not been realized because of its high production cost [51]. In this study, a cost-effective algal harvesting method using bioflocculants produced by Pseudomonas sp. GO2 was investigated. To save as much cost as possible, the fermentation broth of GO2 was directly mixed with algal culture in different volume ratios to evaluate its flocculating efficiency. The results showed the flocculating efficiencies of two green microalgae were significantly enhanced by increasing the ratio of GO2 fermentation broth and algal culture (Fig. 7A). The maximum flocculating efficiency was 77.9% at the GO2 fermentation broth/algal culture ratio of 3.5/40 for Chlorella zofingiensis (C. zofingiensis), while it was up to 88.9% for Neochloris oleoabundans (N. oleoabundans) at the corresponding ratio of 3/40 (Fig. 7A). The dosage of GO2 bioflocculants was significantly lower than that of other bacterial bioflocculants. Cellulosimicrobium cellulans L804 started to show the effective flocculating ability only when the fermentation broth and algal culture ratio was up to 1/6 for flocculating Chlamydomonas reinhardtii and 1/2 for flocculating Chlorella minutissima [18]. The corresponding ratio of 3/1 was needed by using the fermentation broth of Solibacillus silvestris W01 although 90% microalga Nannochloropsis oceanica can be harvested [22]. Moreover, the images showed that the algal cells were separately scattered before flocculation (Fig. 7B), while they were connected as large aggregates after flocculation (Fig. 7C), thus settling easily due to faster sedimentation [13].

Fig. 7
figure 7

A Effects of different volume ratios of GO2 fermentation broth/algal culture on the flocculating efficiencies of two green microalgae, Chlorella zofingiensis and Neochloris oleoabundans. Microscopic views of Neochloris oleoabundans cells before (B) and after (C) bioflocculation. Data are the means of four replicates ± SE, and bars with different letters are significantly different at p < 0.05 according to Duncan’s multiple range test. Bar = 50 μm

The possible mechanism of flocculation for harvesting microalgae

Based on the characteristics analysis and the results of microalgae harvest, the possible flocculation mechanism of bioflocculants produced by GO2 was concluded as follows (Fig. 8): first, the bioflocculants produced by GO2 presented a negative zeta potential and charge density, which is the same with microalgae [14], indicating that microalgal harvest mechanism through these bioflocculants depended on sweeping and bridging, rather than electrical neutralization [52]; second, the cations were indispensable in the process of flocculation, further indicating bridging and patching played major roles in this flocculation. The cations can stabilize and neutralize the negative change of functional groups, which helped to overcome the electrostatic repulsion between bioflocculants and microalgal cells, and enhance flocculation; third, the high molecular weight bioflocculants can also stabilize the suspension and tend to flocculate through bridging. Bridging easily occurs when the extended distance of flocculant from the surface of particles into the solution is greater than the distance from the repulsion of interparticles [53].

Fig. 8
figure 8

The possible mechanism of bioflocculants produced by GO2 in flocculating microalgal cells


Low-cost bioflocculant was produced from untreated corn stover by a biomass-degrading bacterium Pseudomonas sp. GO2. The gram’s iodine staining and BRT analysis showed that GO2 directly utilized untreated biomass as carbon source to produce bioflocculant. An ideal flocculating efficiency of 99.8% was obtained under the optimal conditions (fermentation time 130.46 h, initial pH 7.46, and corn stover 0.64%). The extracted bioflocculant showed a high pH and temperature tolerance with a maximum flocculating efficiency of 94.7% at the dosage of 12.5 mg L−1. Furthermore, the low-cost bioflocculant can effectively harvest two green microalgae in a low GO2 fermentation broth/algal culture ratio.


Isolation and identification of bioflocculant-producing bacteria

A biomass-degrading bacterium was isolated from paper mill sludge by Gram’s iodine staining method according to our previous description [28]. When culturing the strain in the mineral salt medium (NaNO3 0.1 g L−1, K2HPO4 0.1 g L−1, KCl 0.1 g L−1, MgSO4 0.05 g L−1, yeast extract 0.05 g L−1, and peptone 0.3 g L−1) containing 0.5% various untreated lignocellulosic biomasses, the fermentation broths became highly transparent and viscous, and biomass was compact and deposited at the bottom of flask after 48 h of incubation at 37 °C and 200 rpm. The strain was finally confirmed as a bioflocculant-producing bacterium by evaluating the flocculating rate of the fermentation broth. To identify the species of this bacterium, its genome was extracted using a Bacteria DNA kit (Bio Basic, Markham, Ontario, Canada). The 16S rRNA gene was amplified through polymerase chain reaction (PCR) using the primers: HAD-1 (5′-GACTCCTACGGGAGGCAGCAT-3′) and E1115R (5′-AGG GTTGCGCTCGTTGCGGG-3′). Then the PCR products were purified for sequencing.

Evaluation of biomass degradation ability and enzyme activity assay

The biomass degradation ability of this strain was evaluated by using various lignocellulosic biomasses as carbon source as described by Guo et al. [28]. In brief, 5 μL of overnight-grown culture was inoculated on agar plates containing above mineral salt medium, 1.5% agar, and 0.5% agave, corn stover, Miscanthus, wheat bran, wood dust, CMC or beechwood xylan (Sigma-Aldrich, St. Louis, MO, USA). After incubation at 37 °C for 48 h, all of the plates were treated with Gram’s iodine reagent for 3–5 min. Then the diameters of the halo region (D) were measured on a centimeter scale.

The activities of CMCase and xylanase were evaluated by using CMC and xylan as substrate, respectively, as descripted by Guo et al. [28]. The concentrations of reducing sugar were determined using the 3,5-dinitrosalicylic acid (DNS, Sigma-Aldrich, St. Louis, MO, USA) reagent described by Miller [54]. A range of d-glucose and d-xylose (0–1.2 mg mL−1) concentrations were used to plot the standard curves for the hydrolysis production of CMC and xylan, respectively.

Measurement of flocculating efficiency

The flocculating efficiency was tested as described by Kurane et al. [55] with some minor modifications. In brief, 200 μL of sample and 1.0 mL of 10% (w/v) CaCl2 were mixed with 40 mL of 0.5% (w/v) kaolin clay (Sigma-Aldrich, St. Louis, MO, USA) solution in a 50 mL glass-beaker, shaken at 100 rpm for 2 min, and left to stand for 1 min at 25 ± 2 °C. The optical density (OD) of the upper phase was measured at 550 nm using a microplate spectrophotometer (Epoch, Bio Tek Instruments, Inc., Vermont, USA). The flocculating efficiency was calculated as follows: Flocculating efficiency (%) = (A − B)/A × 100 × D, where A and B are the optical densities of the control and the samples at 550 nm, respectively, and D is the dilution time of the supernatant of the fermentation broth.

Optimization of bioflocculant production and boosted regression tree (BRT) analysis

To estimate the effects of various biomasses on the production of bioflocculants using Pseudomonas sp. GO2, the strain was cultivated in the mineral salt medium containing 0.5% (w/v) untreated agave, corn stover, Miscanthus and wheat bran at 37 °C with agitation at 200 rpm, and the flocculating efficiency was monitored every day for 8 days. To determine the effects of incubation time, initial pH and biomass content on the production of bioflocculants, an experimental design matrix was performed via RSM using the Design-Expert software (Version 8.0.6., Stat-Ease Inc., Minneapolis, USA) according to our previous description [45]. The matrix included a total of 20 experiments, and all experiments were executed at 37 °C with shaking at 200 rpm. The fermentation broths were harvested every day and centrifuged at 12,000g for 3 min. Then the supernatant was used to determine the flocculating efficiency, and CMCase and xylanase activities.

To partition independent influences of incubation time, CMCase activity, xylanase activity, biomass concentration, and initial pH on bioflocculants’ production, The BRT model was built by the R-software (version 2.10.1, R development Core team 2009) with the ‘gbm’ package using a Bernoulli error structure [56], and with brt.functions [39]. The relative influence of each parameter in the model was measured according to the number of times that variable was selected for splitting in the tree, weighted by the squared improvement and averaged over all trees [57].

Extraction and characteristics of the bioflocculants

The bioflocculants produced by GO2 were purified as descripted by Xiong et al. [58] with some minor modifications. In brief, GO2 strain was cultured using untreated corn stover as carbon source to produce bioflocculants in the optimal conditions. Then the fermentation broth was stored at 4 °C for at least 6 h to settle the solids. The supernatants were carefully transferred to a new flask and mixed with two volumes of pre-cooling ethanol, and the resultant sediment was collected by centrifugation at 5000g for 10 min, washed three times with 75% ethanol, and finally lyophilized to acquire the dryness bioflocculants.

To analyze the compositions of bioflocculants, the total polysaccharides were determined using the anthrone-sulfuric acid method, and d-glucose was selected as the standard sample [59]; the total protein was obtained by using the Bradford Protein Assay Kit (Bio Basic Canada Inc., Markhan, ON, CA) according to our previous description [60]; the uronic acid content was measured by cabazoic sulfuric acid method with d-(+)galacturonic acid as the standard sample [61]; while the nucleic acid content was quantified by the spectrophotometer. The molecular weight, charge density and Zeta potential of the bioflocculants were determined as descripted by Wang et al. [62]. The viscosity of the bioflocculants was measured using an OB-C218 Ubbelohde Viscometer (Cannon instrument company, USA) according to the method of Cui et al. [63]. The spectrum of bioflocculant was measured by a Bruker Tensor 37 FTIR Spectrophotometer (Bruker Optics, Inc., Billerica, MA) according to our previous description [45].

Flocculating properties of the extracted bioflocculant

To understand the flocculating properties of bioflocculants, the effects of bioflocculants dosage, pH, temperature, and various metal ions on the flocculating efficiency of kaolin clay solution were recorded. The dosage of bioflocculants was set to range from 1.25 to 18.75 mg L−1. For the measurement of optimal pH and temperature, the flocculating efficiencies were assayed at various pH values (3–13) and various temperatures (4–80 °C). To investigate the effects of various metal ions, the monovalent cations (Na+ and K+), bivalent cations (Ca2+ and Mg2+), and trivalent cations (Al3+ and Fe3+) at the concentrations of 2.5, 5.0, 7.5, 10.0, and 15.0 mg L−1 were used.

Evaluation the effect of the bioflocculant on the harvest of microalgae

Two green microalgal strains C. zofingiensis and N. oleoabundans were obtained from Dr. Lu at Hubei University of Technology and Dr. Chirs Lan at the University of Ottawa, respectively. The cells were grown in BG-11 medium under the conditions of the room temperature (25 ± 1 °C) with a light/dark cycle of 16:8 h (cool-white fluorescent light intensity of 100 ± 2 μmol m−2 s−1), and a constant shaking at 150 rpm. After 2 weeks of incubation, the biomass yields of C. zofingiensis and N. oleoabundans were about 1.8 and 2.0 g L−1 dry weight, respectively, and the algal culture was used for the harvest experiment.

The flocculating efficiencies of the two green microalgae (C. zofingiensis and N. oleoabundans) were evaluated by directly incubating the GO2 fermentation broth with algal culture. Different volumes of the fermentation broth (0.5–4 mL) were mixed with 40 mL algal culture containing 1 mL 10% CaCl2 solution. The mixture was stirred at 100 rpm for 2 min, and allowed to settle for 10 min at room temperature. Then the OD of the upper phase was measured at 680 nm using a microplate spectrophotometer (Epoch, Bio Tek Instruments, Inc., Vermont, USA). The flocculating efficiency of the microalgae was calculated as follows: flocculating efficiency (%) = (A − B)/A × 100 × D, where A and B are the optical densities of the control and the samples at 680 nm, respectively; D is the dilution time of the supernatant of the fermentation broth.

The microscopic images of N. oleoabundans cells before, and after flocculation using the GO2 fermentation broth were observed using an Olympus BX51 microscope (Olympus Optical, Tokyo, Japan) as descripted by Guo et al. [28]. In brief, the cells were harvested by centrifugation at 4000g for 5 min and resuspended in equal volume of deionized water after washing three times with deionized water. Then 20 μL of appropriate diluted algae cells were attached to a clean glass slide, and picture was taken.

Statistical analysis

All the experiments were analyzed in quadruplicate, and the data are shown as mean ± SD. Statistical analysis was performed by one-way analysis of variance using the program, SPSS (SPSS Inc., USA, version 13.0). The matrix plot of the halo diameter was performed by means of the Past software (version 3.16) [64].



boosted regression tree


carboxymethyl cellulose


carboxymethyl cellulase


3,5-dinitrosalicylic acid


response surface methodology


  1. Borowitzka MA. High-value products from microalgae—their development and commercialisation. J Appl Phycol. 2013;25:743–56.

    Article  CAS  Google Scholar 

  2. Klok AJ, Martens DE, Wijffels RH, Lamers PP. Simultaneous growth and neutral lipid accumulation in microalgae. Bioresour Technol. 2013;134:233–43.

    Article  CAS  Google Scholar 

  3. Pragya N, Pandey KK, Sahoo P. A review on harvesting, oil extraction and biofuels production technologies from microalgae. Renew Sustain Energy Rev. 2013;24:159–71.

    Article  CAS  Google Scholar 

  4. Slade R, Bauen A. Micro-algae cultivation for biofuels: cost, energy balance, environmental impacts and future prospects. Biomass Bioenergy. 2013;53:29–38.

    Article  Google Scholar 

  5. Milledge JJ, Heaven S. A review of the harvesting of micro-algae for biofuel production. Rev Environ Sci Bio/Technol. 2013;12:165–78.

    Article  Google Scholar 

  6. Uduman N, Qi Y, Danquah MK, Forde GM, Hoadley A. Dewatering of microalgal cultures: a major bottleneck to algae-based fuels. J Renew Sustain Energy. 2010;2:012701.

    Article  Google Scholar 

  7. Leite GB, Abdelaziz AE, Hallenbeck PC. Algal biofuels: challenges and opportunities. Bioresour Technol. 2013;145:134–41.

    Article  CAS  Google Scholar 

  8. Sim T-S, Goh A, Becker E. Comparison of centrifugation, dissolved air flotation and drum filtration techniques for harvesting sewage-grown algae. Biomass. 1988;16:51–62.

    Article  Google Scholar 

  9. Danquah MK, Ang L, Uduman N, Moheimani N, Forde GM. Dewatering of microalgal culture for biodiesel production: exploring polymer flocculation and tangential flow filtration. J Chem Technol Biotechnol. 2009;84:1078–83.

    Article  CAS  Google Scholar 

  10. Zhang X, Hu Q, Sommerfeld M, Puruhito E, Chen Y. Harvesting algal biomass for biofuels using ultrafiltration membranes. Bioresour Technol. 2010;101:5297–304.

    Article  CAS  Google Scholar 

  11. Coward T, Lee JG, Caldwell GS. Development of a foam flotation system for harvesting microalgae biomass. Algal Res. 2013;2:135–44.

    Article  Google Scholar 

  12. Odjadjare EC, Mutanda T, Olaniran AO. Potential biotechnological application of microalgae: a critical review. Crit Rev Biotechnol. 2017;37:37–52.

    Article  CAS  Google Scholar 

  13. Wang L, Ma F, Qu Y, Sun D, Li A, Guo J, Yu B. Characterization of a compound bioflocculant produced by mixed culture of Rhizobium radiobacter F2 and Bacillus sphaeicus F6. World J Microbiol Biotechnol. 2011;27:2559–65.

    Article  CAS  Google Scholar 

  14. Van Haver L, Nayar S. Polyelectrolyte flocculants in harvesting microalgal biomass for food and feed applications. Algal Res. 2017;24:167–80.

    Article  Google Scholar 

  15. Garzon-Sanabria AJ, Davis RT, Nikolov ZL. Harvesting Nannochloris oculata by inorganic electrolyte flocculation: effect of initial cell density, ionic strength, coagulant dosage, and media pH. Bioresour Technol. 2012;118:418–24.

    Article  CAS  Google Scholar 

  16. Ho Y, Norli I, Alkarkhi AF, Morad N. Characterization of biopolymeric flocculant (pectin) and organic synthetic flocculant (PAM): a comparative study on treatment and optimization in kaolin suspension. Bioresour Technol. 2010;101:1166–74.

    Article  CAS  Google Scholar 

  17. Kim D-G, La H-J, Ahn C-Y, Park Y-H, Oh H-M. Harvest of Scenedesmus sp. with bioflocculant and reuse of culture medium for subsequent high-density cultures. Bioresour Technol. 2011;102:3163–8.

    Article  CAS  Google Scholar 

  18. Liu W, Zhao C, Jiang J, Lu Q, Hao Y, Wang L, Liu C. Bioflocculant production from untreated corn stover using Cellulosimicrobium cellulans L804 isolate and its application to harvesting microalgae. Biotechnol Biofuels. 2015;8:170.

    Article  Google Scholar 

  19. Wu J-Y, Ye H-F. Characterization and flocculating properties of an extracellular biopolymer produced from a Bacillus subtilis DYU1 isolate. Process Biochem. 2007;42:1114–23.

    Article  CAS  Google Scholar 

  20. Ndikubwimana T, Zeng X, Liu Y, Chang J-S, Lu Y. Harvesting of microalgae Desmodesmus sp. F51 by bioflocculation with bacterial bioflocculant. Algal Res. 2014;6:186–93.

    Article  Google Scholar 

  21. Peng L, Yang C, Zeng G, Wang L, Dai C, Long Z, Liu H, Zhong Y. Characterization and application of bioflocculant prepared by Rhodococcus erythropolis using sludge and livestock wastewater as cheap culture media. Appl Microbiol Biotechnol. 2014;98:6847–58.

    Article  CAS  Google Scholar 

  22. Wan C, Zhao X-Q, Guo S-L, Alam MA, Bai F-W. Bioflocculant production from Solibacillus silvestris W01 and its application in cost-effective harvest of marine microalga Nannochloropsis oceanica by flocculation. Bioresour Technol. 2013;135:207–12.

    Article  CAS  Google Scholar 

  23. Mabinya LV, Cosa S, Nwodo U, Okoh AI. Studies on bioflocculant production by Arthrobacter sp. Raats, a freshwater bacteria isolated from Tyume River, South Africa. Int J Mol Sci. 2012;13:1054–65.

    Article  CAS  Google Scholar 

  24. Liu W, Hao Y, Jiang J, Zhu A, Zhu J, Dong Z. Production of a bioflocculant from Pseudomonas veronii L918 using the hydrolyzate of peanut hull and its application in the treatment of ash-flushing wastewater generated from coal fired power plant. Bioresour Technol. 2016;218:318–25.

    Article  CAS  Google Scholar 

  25. Zhong C, Xu A, Chen L, Yang X, Yang B, Hong W, Mao K, Wang B, Zhou J. Production of a bioflocculant from chromotropic acid waste water and its application in steroid estrogen removal. Colloids Surf B Biointerfaces. 2014;122:729–37.

    Article  CAS  Google Scholar 

  26. Liu C, Hao Y, Jiang J, Liu W. Valorization of untreated rice bran towards bioflocculant using a lignocellulose-degrading strain and its use in microalgal biomass harvest. Biotechnol Biofuels. 2017;10:90.

    Article  Google Scholar 

  27. Kasana RC, Salwan R, Dhar H, Dutt S, Gulati A. A rapid and easy method for the detection of microbial cellulases on agar plates using Gram’s iodine. Curr Microbiol. 2008;57:503–7.

    Article  CAS  Google Scholar 

  28. Guo H, Chen H, Fan L, Linklater A, Zheng B, Jiang D, Qin W. Enzymes produced by biomass-degrading bacteria can efficiently hydrolyze algal cell walls and facilitate lipid extraction. Renew Energy. 2017;109:195–201.

    Article  CAS  Google Scholar 

  29. Woo HL, Hazen TC, Simmons BA, DeAngelis KM. Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. Syst Appl Microbiol. 2014;37:60–7.

    Article  CAS  Google Scholar 

  30. Cheng C-L, Chang J-S. Hydrolysis of lignocellulosic feedstock by novel cellulases originating from Pseudomonas sp. CL3 for fermentative hydrogen production. Bioresour Technol. 2011;102:8628–34.

    Article  CAS  Google Scholar 

  31. Maki ML, Idrees A, Leung KT, Qin W. Newly isolated and characterized bacteria with great application potential for decomposition of lignocellulosic biomass. J Mol Microbiol Biotechnol. 2012;22:156–66.

    Article  CAS  Google Scholar 

  32. FitzPatrick M, Champagne P, Cunningham MF, Whitney RA. A biorefinery processing perspective: treatment of lignocellulosic materials for the production of value-added products. Bioresour Technol. 2010;101:8915–22.

    Article  CAS  Google Scholar 

  33. Morgan HM, Bu Q, Liang J, Liu Y, Mao H, Shi A, Lei H, Ruan R. A review of catalytic microwave pyrolysis of lignocellulosic biomass for value-added fuel and chemicals. Bioresour Technol. 2017;230:112–21.

    Article  CAS  Google Scholar 

  34. Wang JD, Levin PA. Metabolism, cell growth and the bacterial cell cycle. Nat Rev Microbiol. 2009;7:822.

    Article  CAS  Google Scholar 

  35. Wang Z, Wang Y, Zhang D, Li J, Hua Z, Du G, Chen J. Enhancement of cell viability and alkaline polygalacturonate lyase production by sorbitol co-feeding with methanol in Pichia pastoris fermentation. Bioresour Technol. 2010;101:1318–23.

    Article  CAS  Google Scholar 

  36. Lin J, Harichund C. Production and characterization of heavy-metal removing bacterial bioflocculants. Afr J Biotechnol. 2012;11:9619–29.

    Article  CAS  Google Scholar 

  37. Liu W, Wang K, Li B, Yuan H, Yang J. Production and characterization of an intracellular bioflocculant by Chryseobacterium daeguense W6 cultured in low nutrition medium. Bioresour Technol. 2010;101:1044–8.

    Article  CAS  Google Scholar 

  38. Friedman J, Hastie T, Tibshirani R. Additive logistic regression: a statistical view of boosting (with discussion and a rejoinder by the authors). Ann Stat. 2000;28:337–407.

    Article  Google Scholar 

  39. Elith J, Leathwick JR, Hastie T. A working guide to boosted regression trees. J Anim Ecol. 2008;77:802–13.

    Article  CAS  Google Scholar 

  40. Jorda H, Bechtold M, Jarvis N, Koestel J. Using boosted regression trees to explore key factors controlling saturated and near-saturated hydraulic conductivity. Eur J Soil Sci. 2015;66:744–56.

    Article  CAS  Google Scholar 

  41. Bhalla A, Bansal N, Kumar S, Bischoff KM, Sani RK. Improved lignocellulose conversion to biofuels with thermophilic bacteria and thermostable enzymes. Bioresour Technol. 2013;128:751–9.

    Article  CAS  Google Scholar 

  42. Aljuboori AHR, Idris A, Abdullah N, Mohamad R. Production and characterization of a bioflocculant produced by Aspergillus flavus. Bioresour Technol. 2013;127:489–93.

    Article  CAS  Google Scholar 

  43. Makapela B, Okaiyeto K, Ntozonke N, Nwodo UU, Green E, Mabinya LV, Okoh AI. Assessment of Bacillus pumilus isolated from fresh water milieu for bioflocculant production. Appl Sci. 2016;6:211.

    Article  Google Scholar 

  44. Gao J, Bao H-Y, Xin M-X, Liu Y-X, Li Q, Zhang Y-F. Characterization of a bioflocculant from a newly isolated Vagococcus sp. W31. J Zhejiang Univ Sci B. 2006;7:186–92.

    Article  CAS  Google Scholar 

  45. Guo H, Wu Y, Hong C, Chen H, Chen X, Zheng B, Jiang D, Qin W. Enhancing digestibility of Miscanthus using lignocellulolytic enzyme produced by Bacillus. Bioresour Technol. 2017;245:1008–15

    Article  CAS  Google Scholar 

  46. Pathak M, Sarma HK, Bhattacharyya KG, Subudhi S, Bisht V, Lal B, Devi A. Characterization of a novel polymeric bioflocculant produced from bacterial utilization of n-hexadecane and its application in removal of heavy metals. Front Microbiol. 2017;8:170.

    Article  Google Scholar 

  47. Pan Y, Shi B, Zhang Y. Research on flocculation property of bioflocculant PG. a21 Ca. Mod Appl Sci. 2009;3:106.

    Article  CAS  Google Scholar 

  48. Patil SV, Patil CD, Salunke BK, Salunkhe RB, Bathe G, Patil DM. Studies on characterization of bioflocculant exopolysaccharide of Azotobacter indicus and its potential for wastewater treatment. Appl Biochem Biotechnol. 2011;163:463–72.

    Article  CAS  Google Scholar 

  49. Salehizadeh H, Shojaosadati S. Extracellular biopolymeric flocculants: recent trends and biotechnological importance. Biotechnol Adv. 2001;19:371–85.

    Article  CAS  Google Scholar 

  50. Salehizadeh H, Vossoughi M, Alemzadeh I. Some investigations on bioflocculant producing bacteria. Biochem Eng J. 2000;5:39–44.

    Article  CAS  Google Scholar 

  51. Feng P, Deng Z, Hu Z, Fan L. Lipid accumulation and growth of Chlorella zofingiensis in flat plate photobioreactors outdoors. Bioresour Technol. 2011;102:10577–84.

    Article  CAS  Google Scholar 

  52. Zhang C, Wang X, Wang Y, Li Y, Zhou D, Jia Y. Synergistic effect and mechanisms of compound bioflocculant and AlCl3 salts on enhancing Chlorella regularis harvesting. Appl Microbiol Biotechnol. 2016;100:5653.

    Article  CAS  Google Scholar 

  53. Levy N, Magdassi S, Bar-Or Y. Physico-chemical aspects in flocculation of bentonite suspensions by a cyanobacterial bioflocculant. Water Res. 1992;26:249–54.

    Article  CAS  Google Scholar 

  54. Miller GL. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem. 1959;31:426–8.

    Article  CAS  Google Scholar 

  55. Kurane R, Hatamochi K, Kakuno T, Kiyohara M, Hirano M, Taniguchi Y. Production of a bioflocculant by Rhodococcus erythropolis S-1 grown on alcohols. Biosci Biotechnol Biochem. 1994;58:428–9.

    Article  CAS  Google Scholar 

  56. Ridgeway G. Generalized boosted models: a guide to the gbm package. Update. 2007;1:2007.

    Google Scholar 

  57. Friedman JH, Meulman JJ. Multiple additive regression trees with application in epidemiology. Stat Med. 2003;22:1365–81.

    Article  Google Scholar 

  58. Xiong Y, Wang Y, Yu Y, Li Q, Wang H, Chen R, He N. Production and characterization of a novel bioflocculant from Bacillus licheniformis. Appl Environ Microbiol. 2010;76:2778–82.

    Article  CAS  Google Scholar 

  59. Leyva A, Quintana A, Sánchez M, Rodríguez EN, Cremata J, Sánchez JC. Rapid and sensitive anthrone–sulfuric acid assay in microplate format to quantify carbohydrate in biopharmaceutical products: method development and validation. Biologicals. 2008;36:134–41.

    Article  CAS  Google Scholar 

  60. Guo H, Lin C, Wang S, Jiang D, Zheng B, Liu Y, Qin W. Characterization of a novel laccase-producing Bacillus sp. A4 and its application in Miscanthus degradation. Bioresources. 2017;12:4776–94.

    CAS  Google Scholar 

  61. Barker S, Young N. Isolation of hyaluronic acid by gel filtration on agarose. Carbohydr Res. 1966;2:363–70.

    Article  CAS  Google Scholar 

  62. Wang S, Konduri MK, Hou Q, Fatehi P. Cationic xylan–METAC copolymer as a flocculant for clay suspensions. RSC Adv. 2016;6:40258–69.

    Article  CAS  Google Scholar 

  63. Cui L, Goodwin C, Gao W, Liao B. Effect of cold water temperature on membrane structure and properties. J Membr Sci. 2017;540:19–26.

    Article  CAS  Google Scholar 

  64. Hammer Ø, Harper D, Ryan P. PAST: paleontological statistics software package for education and data analysis. Paleontol Electron. 2001;4:1–9.

    Google Scholar 

Download references

Authors’ contributions

HPG designed the experiments, carried out the study, analyzed the data, and drafted the manuscript. CTH, BSZ, and FL helped to analyze these data and draft the manuscript. DAJ and WSQ participated in the design of the experiments and revising the manuscript. All authors read and approved the final manuscript.


Authors would like to thank Dr. Lu at Hubei University of Technology and Dr. Chirs Lan at the University of Ottawa for providing the green microalgae. The authors also thank Andrew Linklater for assistance in editing the manuscript to improve the language..

Competing interests

The authors declare that they have no competing interests.

Availability of supporting data

The dataset supporting the conclusions of this article was included within the article.

Ethics approval and consent to participate

Not applicable.


This work was supported by the Natural Sciences and Engineering Research Council of Canada (Grant number RGPIN-2017-05366) to WSQ, and the China Scholarship Council (Grant number 201506320044) to HPG.

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Author information

Authors and Affiliations


Corresponding author

Correspondence to Wensheng Qin.

Additional file


Additional file 1: Fig. S1. Phylogenetic tree of Pseudomonas sp. GO2. 16S rRNA gene sequences were retrieved by BLAST searches in NCBI and subjected to phylogenetic analysis using the neighbor-joining method with MEGA6 using 1000 bootstraps. Fig. S2. Fourier transform infrared spectrum of the bioflocculants produced by Pseudomonas sp. GO2 strain.

Rights and permissions

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (, which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( applies to the data made available in this article, unless otherwise stated.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Guo, H., Hong, C., Zheng, B. et al. Bioflocculants’ production in a biomass-degrading bacterium using untreated corn stover as carbon source and use of bioflocculants for microalgae harvest. Biotechnol Biofuels 10, 306 (2017).

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: