- Open Access
Mechanistic insight in the selective delignification of wheat straw by three white-rot fungal species through quantitative 13C-IS py-GC–MS and whole cell wall HSQC NMR
© The Author(s) 2018
- Received: 11 July 2018
- Accepted: 11 September 2018
- Published: 26 September 2018
The white-rot fungi Ceriporiopsis subvermispora (Cs), Pleurotus eryngii (Pe), and Lentinula edodes (Le) have been shown to be high-potential species for selective delignification of plant biomass. This delignification improves polysaccharide degradability, which currently limits the efficient lignocellulose conversion into biochemicals, biofuels, and animal feed. Since selectivity and time efficiency of fungal delignification still need optimization, detailed understanding of the underlying mechanisms at molecular level is required. The recently developed methodologies for lignin quantification and characterization now allow for the in-depth mapping of fungal modification and degradation of lignin and, thereby, enable resolving underlying mechanisms.
Wheat straw treated by two strains of Cs (Cs1 and Cs12), Pe (Pe3 and Pe6) and Le (Le8 and Le10) was characterized using semi-quantitative py-GC–MS during fungal growth (1, 3, and 7 weeks). The remaining lignin after 7 weeks was quantified and characterized using 13C lignin internal standard based py-GC–MS and whole cell wall HSQC NMR. Strains of the same species showed similar patterns of lignin removal and degradation. Cs and Le outperformed Pe in terms of extent and selectivity of delignification (Cs ≥ Le >> Pe). The highest lignin removal [66% (w/w); Cs1] was obtained after 7 weeks, without extensive carbohydrate degradation (factor 3 increased carbohydrate-to-lignin ratio). Furthermore, though after treatment with Cs and Le comparable amounts of lignin remained, the structure of the residual lignin vastly differed. For example, Cα-oxidized substructures accumulated in Cs treated lignin up to 24% of the total aromatic lignin, a factor two higher than in Le-treated lignin. Contrarily, ferulic acid substructures were preferentially targeted by Le (and Pe). Interestingly, Pe-spent lignin was specifically depleted of tricin (40% reduction). The overall subunit composition (H:G:S) was not affected by fungal treatment.
Cs and Le are both able to effectively and selectively delignify wheat straw, though the underlying mechanisms are fundamentally different. We are the first to identify that Cs degrades the major β-O-4 ether linkage in grass lignin mainly via Cβ–O–aryl cleavage, while Cα–Cβ cleavage of inter-unit linkages predominated for Le. Our research provides a new insight on how fungi degrade lignin, which contributes to further optimizing the biological upgrading of lignocellulose.
- Ceriporiopsis subvermispora
- Lentinula edodes
- Pleurotus eryngii
- Lignin degradation
- Lignin quantification
- Ligninolytic enzymes
Lignocellulosic biomass, such as wheat straw, is a highly abundant, valuable source of polysaccharides for the production of animal feed or biofuels and biochemicals [1–4]. The presence of lignin, however, hinders the conversion of these polysaccharides and, therefore, necessitates the use of pretreatments aimed at lignin removal or degradation. These physical and/or chemical hydrothermal pretreatments require extensive amounts of energy and chemicals . A sustainable alternative is the use of white-rot fungi as a biological pretreatment and is increasingly receiving attention [2, 6–9]. Among these fungi, the species Ceriporiopsis subvermispora (Cs), Pleurotus eryngii (Pe), and Lentinula edodes (Le) were shown to be particularly promising as they extensively and selectively removed lignin over cell wall polysaccharides, in comparison with other more commonly studied white-rot fungi like P. chrysosporium . Such fungal delignification results in a greatly enhanced enzymatic degradability of polysaccharides in further downstream processes [11–13]. To optimize the pretreatment with these fungi, mainly in terms of selectivity and time efficiency, it is important to understand delignification and the underlying mechanisms at a molecular level. Such mechanistic insight facilitates the pinpointing of potential bottlenecks in the (enzymatic) process and might provide means to circumvent them, e.g., via supplementation of co-factors for the respective enzymes. Besides enabling control of the pretreatment process, mechanistic insight expands our understanding of how fungi function in nature and how they contribute to terrestrial carbon-recycling.
Lignin degradation by white-rot fungi in general relies on a complex enzymatic machinery which is, depending on the species, mainly based on lignin peroxidases (LiP), manganese peroxidases (MnP), laccases (Lac), and the H2O2 generating aryl-alcohol oxidases (AAO). Collectively, the catalytic performance of these enzymes results in the generation of radicals, i.e., aromatic or hydroxyl radicals, which can lead to various reactions such as Cα–Cβ cleavage, breakdown of the β-O-4 ether, aromatic ring cleavage, and demethoxylation, but also to polymerization [20–24].
Although C. subvermispora, P. eryngii, and L. edodes all produce MnP, Lac, and AAO, they were shown to differ in the number of genes encoding for these enzymes, which suggests different dependencies on the particular enzymes [25–29]. Interestingly, none of these fungi possesses genes encoding for LiP. Instead, versatile peroxidases were detected in Pe, whereas Cs was shown to produce two enzymes with lignin peroxidase and versatile peroxidase like activity [29, 30]. It is clear from this variation in ligninolytic enzyme-encoding genes that these fungi employ different strategies for delignification. However, whether these different strategies emerge into different underlying mechanisms remains unknown. Furthermore, it is poorly understood whether certain structural motifs of lignin are preferentially degraded or modified by the respective enzymatic machineries and, thus, lead to different residual lignin structures [20, 22].
To the best of our knowledge, research on the conversion of grass lignin is limited [31–33], and studies, where the fungi were compared under the same experimental conditions, are scarce [11, 12, 34]. Furthermore, lignin degradation was, contentwise, only determined using unspecific gravimetric analysis, which is thought to be particularly inaccurate for fungal-grown samples due to the presence of residual chitin and includes (acid) recalcitrant lignin only [20, 35]. Moreover, the scarce studies aimed at elucidating structural features of fungal-treated lignin in situ focused on using qualitative pyrolysis gas chromatography–mass spectrometry (py-GC–MS). Though considerable structural changes in fungal-treated wheat straw lignin could be revealed, mainly in terms of preference for phenolic lignin substructures and accumulation of Cα-oxidized substructures, underlying mechanisms could not be elucidated [11, 12, 31]. More accurate and in-depth analysis of both lignin content as well as lignin structural features in fungal-treated biomass is expected to further resolve the employed lignin degrading mechanisms.
The recent development of a highly accurate pyrolysis gas chromatography–mass spectrometry (py-GC–MS) method that uses 13C lignin as internal standard (13C-IS) offers a great opportunity to specifically quantify residual lignin content in situ, while simultaneously providing structural insight . In addition, developments in the use of heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) allow the analysis of whole cell wall samples in situ, without prior isolation or derivatisation of lignin [37, 38]. In situ analysis avoids the need for laborious lignin isolation procedures that may lead to partial extraction and polymer modification, especially for fungal-treated lignin [39–41].
In this research, the combination of quantitative 13C-IS py-GC–MS and whole cell wall HSQC NMR was applied to fungal-treated wheat straw after growth of two strains of C. subvermispora, P. eryngii, and L. edodes to obtain a better understanding of their delignification mechanisms. We found that both Cs and Le outperform Pe in terms of delignification effectivity and selectivity and, furthermore, vastly differed in residual lignin structures. We were able to identify that these lignin structures originated from fundamentally different delignification mechanisms.
All chemicals were obtained from commercial suppliers and used without further purification. Water used in all experiments was purified via a Milli-Q water system (Millipore, Billerica, MA, USA).
Preparation of the fungal-treated wheat straw
Samples used in the present study were collected from a main experiment on selecting the best performing fungal strains based on their capability to improve the in vitro ruminal degradability of the treated straw . Two high-potential strains from three different fungal species were selected: Cs1 (CBS 347.63) and Cs12 (ME-485) strains for Ceriporiopsis subvermispora, Pe3 (Mycelia2600) and Pe6 (AL04) for Pleurotus eryngii and Le8 (sh 03/08) and Le10 (LE75) for Lentinula edodes. Procedures for fungal strain preparation and pretreatment of the wheat straw have been previously described in detail . Briefly, all strains were maintained on malt extract agar before a piece of that agar (1.5 × 2.0 cm) was used to prepare the spawn for each fungus. The spawn was prepared using sterilized sorghum grains and was incubated at 24 °C for up to 5 weeks. Organic wheat straw (Triticum aestivum L.) was purchased from a local farmer in The Netherlands (batch size 300 kg) and chopped into pieces of approximately 3 cm. Approximately 5 kg of the chopped wheat straw was soaked in water for 3 days at room temperature and excess water was drained for 5 h, resulting in a dry matter loss of 9.3% (w/w). Each container (185 × 185 × 78 mm, Combiness, Nevele, Belgium) was adjusted to contain 90.2 ± 0.3 g of dry matter with a moisture content of ~ 74% (w/w). After autoclaving at 121 °C for 1 h, the straw was inoculated with the prepared spawn at 10% of the dry weight, thereby introducing negligible amounts of sorghum lignin [43, 44]. The wheat straw (treated and untreated with fungi) was incubated in triplicate under solid-state fermentation at 24 °C in a climate-controlled chamber (relative humidity = 75%) for 1, 3, and 7 weeks. After weighing and thorough mixing, ~ 5 g of fresh sample was taken for pH measurements. The remaining sample material was freeze-dried and ground over a 1 mm sieve using a cross beater mill (100AN, Peppink, Olst, The Netherlands). Since biological triplicates showed ~ 5% RSD in the conventional compositional feed analysis, they were thoroughly mixed in equal dry matter amounts (1 g each) to one replicate and ball-milled in a MM200 mixer mill (Retsch, Haan, Germany) for further analyses . We previously showed that untreated straws were stable during incubation and showed minimal variation . Therefore, the untreated wheat straw without incubation was used as control sample in this study.
Carbohydrate content and composition
Carbohydrate content and composition was determined in triplicate by a modified method reported by Englyst and Cummings using inositol as internal standard . Ten mg of each sample was treated with 72% (w/w) H2SO4 for 1 h at 30 °C followed by 1 M H2SO4 for 3 h at 100 °C. The constituent monosaccharides released were analyzed as their alditol-acetate derivatives using gas chromatography (Thermo Scientific, Synnyvale, CA, USA) and represented as anhydromonosaccharides. The uronic acids released after the acid hydrolysis step were determined in duplicate as anhydrouronic acid content by an automated meta-hydroxydiphenyl assay with the addition of sodium tetraborate using an auto-analyzer (Skalar Analytical BV, Breda, The Netherlands) . Glucuronic acid (Fluka AG, Busch, Switzerland) was used as a reference (0–100 μg mL−1). Total carbohydrate content was calculated as the sum of neutral anhydrocarbohydrates and anhydrouronic acids.
Pyrolysis was performed with an EGA/PY-3030D Multi-shot pyrolyzer (Frontier Laboratories, New Ulm, MN, USA) equipped with an AS-1020E Autoshot auto-sampler as previously described [35, 36]. The pyrolyzer was coupled to a GC–MS using a Trace GC equipped with a DB-1701 fused-silica capillary column (30 m × 0.25 mm i.d. 0.25 μm film thickness) coupled to a DSQ-II mass spectrometer (both Thermo Scientific, Waltham, MA, USA). Samples were weighed using an XP6 excellence-plus microbalance (Mettler Toledo, Columbus, OH, USA). Pyrolysis of total biomass (~ 80 µg) was performed at 500 °C for 1 min with an interface temperature of 300 °C. Pyrolysis products were injected on the column via split/splitless injection (at 250 °C) with a split ratio of 1:133 and helium was used as carrier gas with constant flow at 1.5 mL min−1. The GC oven was programmed from 70 °C (2 min) to 270 °C at 5 °C min−1 and held at 270 °C for 15 min. MS detection was used with EI at 70 eV, a source temperature of 250 °C, a scan range of m/z 50–550, and a scan rate of 4.0 scans s−1. Compounds were identified by comparing retention time and mass spectrum with standards, the NIST library and data published by Ralph and Hatfield .
For semi-quantitative analysis, pyrograms were processed by Xcalibur 2.2 software. The two most abundant fragments per compounds were automatically integrated using ICIS peak integration with optimized settings per compound. A manual correction was only applied when irregular peak shapes led to erroneous peak integration with method settings. Areas were normalized by dividing by corresponding relative response factors (RRF), as previously published, multiplied with the molecular weight of the respective compound and summed . Lignin content was estimated on the basis of total area of lignin-derived pyrolysis products and compared to a wheat straw reference sample with known Klason lignin content [acid-insoluble lignin + acid-soluble lignin = 20.5% (w/w)], as described by Jurak et al. . Relative abundances of lignin-derived pyrolysis products were based on areas without molecular weight correction as previously described by Del Río et al. as relative response factor (RRF) values are mole-based . Compounds were classified according to their structural feature (Additional file 2: Table S1) and summed. All samples were prepared and analyzed in triplicate.
Quantitative py-GC–MS with 13C lignin as internal standard
Pyrolysis was carried out as previously described in detail and in the section semi-quantitative py-GC–MS . Briefly, 10 µL of a 13C lignin internal standard (IS) solution (1 mg mL−1 ethanol/chloroform 50:50 v/v) was mixed with ~ 80 µg of sample and dried before analysis. Lignin-derived compounds of which fungal action increased the content above detection limits were identified by qualitative py-GC–MS using full-MS detection and added to the existing SIM method. Lignin-derived pyrolysis products were monitored in selected ion-monitoring (SIM) mode on the two most abundant fragments per compound (both 12C and 13C). The compound vanilloyl acetaldehyde (VAL) was not properly detected in SIM due to a shifted segment and, therefore, was estimated from full-MS analysis. The relative area of VAL vs vanillin as measured by full MS was thereto multiplied by the area of vanillin as measured by SIM. For correction of matrix effects, similar behavior as syringoyl acetaldehyde (SAL) was assumed. Areas for each compound were normalized by dividing by the respective RRF. Relative response factor values were updated to system performance by recalculation to obtain an identical relative abundance of lignin-derived pyrolysis products of the 13C IS added to a wheat straw reference sample (Additional file 1: Eq. 1). Lignin content [% (w/w)] was determined from the sum of lignin-derived pyrolysis products, where RRF corrected areas for each compound were multiplied with the molecular weight of the respective compound and summed instead of the application of the published correction factor of 1.057 (Additional file 1: Eq. 2) . Areas were not corrected for molecular weight before relative abundance determination as previously described by Del Río et al. to allow direct comparison with data obtained by 2D-NMR analysis . Relative abundances of lignin-derived pyrolysis products were normalized for the 13C analogues from the IS present in the same sample to distinguish matrix and treatment effects (Additional file 1: Eqs. 3–5). Compounds were classified according to their structural feature (Additional file 2: Table S1) and summed. All samples were prepared and analyzed in triplicate. Extractive-free samples were identical to total biomass samples for Cs1 and, therefore, not measured for the other fungi.
Whole cell wall 2D HSQC NMR spectroscopy
For NMR analysis of the whole cell wall material, ground wheat straw (1 mm, 2 g) was successively extracted with acetone until the solvent became clear; followed by hot water treatment (100 °C) for 3 h to remove low molecular weight compounds that would interfere with the analysis . The extractive-free residues were then freeze-dried before mixing biological replicates (1 g each) and fine milling in a PM100 planetary ball mill (Retsch, Haan, Germany). Though lignin became increasingly extractable as fungal action proceeded, the structural features of the remaining lignin were highly comparable to that of the total unextracted sample, allowing comparison of NMR and 13C-IS py-GC–MS analyses. Two grams of sample was milled in a 50 mL ZrO2 beaker using 17 Φ 10 mm balls of the same material at a frequency of 600 rpm with a net milling time of 4 h. After every 15 min of milling, a pause of 10 min was set to avoid overheating of the sample. Around 100 mg of ball-milled sample was swollen in 0.75 mL DMSO-d6. 2D heteronuclear single quantum coherence (HSQC) NMR was performed according to previously described methods [15, 37, 38]. The spectra were recorded at 25 °C with Bruker’s standard pulse sequence “hsqcetgpsisp2.2” on a Bruker AVANCE III 600 MHz NMR spectrometer (Bruker BioSpin, Rheinstetten, Germany) equipped with a 5 mm cryo-probe located at MAGNEFY (MAGNEtic resonance facilitY, Wageningen, The Netherlands). The spectral widths were 7200 and 30,000 Hz for the 1H and 13C dimensions, respectively. The number of collected complex points was 2018 in the 1H dimension with a relaxation time of 1 s. The number of collected scans was 16 and 400 increments of time were recorded in the 13C dimension. The 1JCH used was 145 Hz. The data were processed with the Bruker TopSpin 3.5 software. Processing used Gaussian apodization in 1H and a squared cosine function in the 13C dimension. For 13C, data were zero filled up to 1024 points prior to Fourier transformation. The solvent peak (DMSO-d6) was used as an internal reference (δC 39.5 ppm; δH 2.49 ppm). HSQC correlation peaks were assigned by comparison with the literature [15, 48–54]. Semi-quantitative analysis of the volume integrals was performed according to Del Río et al. . Alternatively, in the aliphatic oxygenated region, β-O-4 substructures were estimated from their Cβ–Hβ correlations, since they were shown to be interfered to a lesser extent by the presence of carbohydrates . For phenylcoumaran and resinol substructures, their respective Cα–Hα correlations were used. Volume integrals for resinol substructures were logically halved. S2,6, G2, and H2,6 signals were used for S, G, and H units, respectively, where S and H integrals were halved as well. Oxidized analogues were estimated in a similar manner. Tricin, pCA, and FA were similarly estimated from their respective T2’,6’, pCA2,6, and FA2 signals. H2,6 integrals were corrected for the overlapping phenylalanine cross peak (PHE3,5) by subtraction of the isolated PHE2,6 cross-peak . Volume integration was performed at equal contour levels. Amounts were calculated both as a percentage of total lignin (H + G + Gox + Gmod + S + Sox + Smod) and total lignin including pCA, FA, and T [56, 57].
In earlier work, we showed that the biological variation in the delignification of wheat straw by the strains used in this study was low (pooled standard deviation of biological and analytical triplicates ~ 5% RSD) . For the purpose of this study, biological triplicates were thoroughly mixed (in equal dry matter amounts) and ball-milled (as explained in the section ‘preparation of the fungal-treated straw’), thereby ensuring homogeneous samples for analyses. Albeit low, biological variation was, therefore, not included in the outcomes of this study. Results are presented as average ± standard deviation on the basis of analytical triplicates (when replicates were included). Student’s t test (α = 0.05) was used to evaluate significant differences between strains in terms of lignin and carbohydrate removal.
Wheat straw delignification during fungal growth
Not only were Cs and Le more effective, compared to Pe, they also showed a distinct pattern of lignin removal in time. For Cs and Le, the major part (> 70%) of the final lignin removal occurred within the first 3 weeks, whereas both Pe strains showed a more gradual lignin removal in time, reaching less than 50% of the final lignin removal within 3 weeks. No significant differences (P > 0.05) were found in the extents of lignin removal after 7 weeks of growth between strains of the same species. Though the fungal species (and strains) varied considerably in growth pattern, as recently shown by Nayan et al., the extent of growth (amount of ergosterol formed) was not directly correlated with the extent of lignin degradation .
Although semi-quantitative py-GC–MS gave fair estimates of lignin removal (Fig. 2), the method overestimated lignin removal in all samples by approximately 15%, mainly due to overestimation of the lignin content of the starting material (Additional file 3: Table S2). The results of quantitative py-GC–MS confirmed the effectiveness of Cs, Le, and Pe in degrading lignin, where in the case of Cs and Le, more than 60% (w/w) of lignin was removed from the wheat straw within 7 weeks of treatment. Cs1 outperformed both Le and Pe strains, whereas it was not significantly different from Cs12 in terms of lignin removal. Pe3 removed significantly more lignin than Pe6, while both Le strains were not significantly different.
The three fungal species, furthermore, were capable of removing lignin highly selectively over cell wall carbohydrates (Fig. 3, Additional file 4: Figure S1). After 7 weeks of growth Pe strains were found to have degraded considerable amounts of glucan [8% (w/w) of initial glucan], whereas Cs and Le less affected glucan. Instead, these species degraded glucuronoarabinoxylan (GAX), but to a lesser extent than lignin. Cs1 showed a remarkably higher degradation of GAX than Cs12 (21 vs 5% (w/w) of initial GAX), while both Le strains degraded approximately 12% (w/w) of initial GAX. The selective removal of lignin over carbohydrates has been described in the previous studies for the three fungi used. Though, more extensive hemicellulose degradation has been reported [12, 13, 42]. This is due to the gravimetrical method that was used in these previous studies, in which solubilization and removal cannot be discriminated.
Based on the removal of lignin, glucan and GAX after 7 weeks of fungal growth (Fig. 3), it was concluded that Pe removed considerably more carbohydrates versus lignin than Cs and Le. In addition to the effectiveness of lignin removal, the latter fungi, thus, also seem to outperform Pe in terms of selectivity.
Structural features of fungal-treated lignin
13C-IS py-GC–MS relative abundance of residual lignin compounds of control and fungal-treated wheat straw after 7 weeks of growth
Lignin subunits (%)
9.6 ± 0.4
12.0 ± 0.7
12.1 ± 0.3
10.0 ± 0.7
10.1 ± 0.8
11.1 ± 0.5
11.3 ± 0.5
62.2 ± 0.7
62.1 ± 0.5
59.3 ± 0.3
62.8 ± 1.4
63.3 ± 0.3
64.2 ± 0.2
63.0 ± 0.6
28.2 ± 0.5
26.0 ± 0.4
28.6 ± 0.1
27.2 ± 0.8
26.7 ± 0.9
24.7 ± 0.4
25.6 ± 0.1
0.45 ± 0.0
0.42 ± 0.0
0.48 ± 0.0
0.43 ± 0.0
0.42 ± 0.0
0.38 ± 0.0
0.41 ± 0.0
Structural moieties (%)
4.2 ± 0.2
9.4 ± 0.5
9.4 ± 0.4
6.1 ± 0.4
5.8 ± 0.0
7.1 ± 0.4
7.7 ± 0.4
2.0 ± 0.0
3.2 ± 0.3
3.4 ± 0.2
2.6 ± 0.1
2.5 ± 0.2
2.9 ± 0.1
2.9 ± 0.1
30.6 ± 1.0
30.1 ± 1.7
30.3 ± 0.3
29.6 ± 0.1
31.6 ± 1.2
31.7 ± 0.6
31.3 ± 0.7
7.8 ± 0.4
7.7 ± 0.5
7.8 ± 0.3
7.3 ± 0.4
7.8 ± 0.6
7.8 ± 0.3
7.9 ± 0.4
20.3 ± 0.7
20.4 ± 1.1
20.3 ± 0.0
19.9 ± 0.6
21.4 ± 0.6
21.7 ± 0.4
21.0 ± 0.7
3.7 ± 0.1
13.6 ± 0.6
14.7 ± 0.7
6.0 ± 0.3
5.2 ± 0.3
6.6 ± 0.1
6.9 ± 0.3
2.0 ± 0.1
8.0 ± 0.3
8.1 ± 0.4
3.2 ± 0.2
2.7 ± 0.2
3.9 ± 0.1
4.0 ± 0.2
1.6 ± 0.0
5.6 ± 0.3
6.6 ± 0.3
2.7 ± 0.2
2.5 ± 0.1
2.7 ± 0.0
3.0 ± 0.1
0.4 ± 0.0
7.7 ± 0.4
7.9 ± 0.5
1.9 ± 0.2
1.9 ± 0.2
2.7 ± 0.1
2.9 ± 0.2
1.4 ± 0.0
2.5 ± 0.1
2.7 ± 0.1
1.7 ± 0.1
1.6 ± 0.0
1.8 ± 0.0
1.8 ± 0.0
54.8 ± 0.9
45.3 ± 2.3
43.9 ± 1.4
52.1 ± 0.6
51.4 ± 1.4
48.8 ± 0.6
48.6 ± 0.6
3.3 ± 0.1
3.5 ± 0.1
3.5 ± 0.1
3.9 ± 0.1
3.5 ± 0.5
3.8 ± 0.1
3.8 ± 0.2
PhC γ c
58.5 ± 1.0
50.0 ± 2.3
48.7 ± 0.8
56.6 ± 0.6
55.4 ± 1.6
53.3 ± 0.6
53.0 ± 0.5
58.1 ± 0.9
42.4 ± 2.3
40.8 ± 1.3
54.7 ± 0.8
53.9 ± 1.7
50.6 ± 0.7
50.2 ± 0.3
Unexpectedly, fungal treatment was found to have a minimal effect on the overall composition of lignin subunits, with the largest effect observed for Le8 (H:G:S = 11:64:25) compared to control (H:G:S = 10:62:28), which indicates that all lignin units were targeted in the process of lignin degradation. Although minimal, all fungi except Cs12, showed a preference towards the removal of S units (over H and G units) as demonstrated by slightly lowered S/G (e.g., 0.45 to 0.38 by Le8; Table 1). This preference was less pronounced compared to a previous study, where a factor 2 decrease in S/G was found within 8 weeks of treatment by both Cs and Le [12, 58]. The main difference is the higher S/G of the wheat straw used in the previous study (S/G = 0.7) compared to our wheat straw (S/G = 0.45). Hence, the most likely explanation of the lower S/G preference in our study was the difference in wheat straw used, which differed not only in the overall subunit composition, but might also have differed in the way that these subunits were linked.
Preferential degradation of (sub-)structures with a higher degree of methoxylation has been related to the corresponding lower redox potential and reduced frequency of carbon–carbon (‘condensed’) substructures [12, 33, 58, 59]. Still, as mentioned above, Cs, Pe, and Le did not show a clear preference for degrading the more methoxylated S units over G and H units in our research. Demethoxylation, due to which S units ‘transform’ into G units, and likewise G units into H units, is known to occur due to fungal action, and might, hence, potentially have masked the preferential removal of certain subunits [20, 24].
When categorized according to structural moiety, the residual lignin structures pointed out clear effects related to fungal growth (Table 1). Most pronounced was the increase of unsubstituted and Cα-oxidized pyrolysis products at the expense of products with three carbons in the side-chain (PhCγ) in fungal-treated straw. The relative abundances of these moieties greatly varied across species, with the Cs strains showing the highest increases in unsubstituted (twofold) and Cα-oxidized (fivefold) substructures compared to untreated wheat straw. Again, minimal differences were found between strains of the same species.
These observations are in line with the previous py-GC–MS studies on fungal-treated biomass and have been suggested to indicate degradation of inter-unit linkages within the lignin macromolecule [12, 58–60]. To add to the latter, we hypothesize that in particular, the relative abundance of PhCγ is a measure for the amount of intact inter-unit linkages present, which is substantiated by the NMR data shown below. To explain, it is well known that upon pyrolysis of lignin, the intact (β-O-4) inter-unit linkages, consisting of Cα–Cβ–Cγ aliphatic chains, decompose into products with various structures and chain-lengths (unsubstituted, Cα, Cβ, and Cγ side-chains) . At the pyrolysis conditions applied in our study, secondary reactions are absent. Therefore, lignin pyrolysis mainly yields monomeric products that are a direct result of bond-cleavage . Hence, the maximum chain length of the pyrolysis products equals the chain length of the substructures they originate from. PhCγ products can, thus, only form from structures in which the three-carbon side-chain was initially present, being mainly intact inter-unit linkages. Furthermore, since the content of pendant cinnamyl alcohol and cinnamyl aldehyde end-groups in wheat straw was found to be rather low [15, 62], their contribution to PhCγ products is considered marginal.
Interestingly, for both Cs strains, the increase in Cα-oxidized pyrolysis products was for more than half determined by the two compounds vanilloyl acetaldehyde (VAL) and syringoyl acetaldehyde (SAL). These compounds are, respectively, G and S unit derivatives with three carbons in the side-chain and a ketone at the Cα position (Additional file 1: Table S1, Additional file 5: Figure S2). Analogous to the explanation given above for PhCγ products, we hypothesize that VAL and SAL solely formed from oxidized β-O-4 linkages and/or their cleavage products of which the three-carbon (α, β, and γ) side chain remained intact. To challenge this hypothesis, it can be postulated that pyrolysis of tricin (Fig. 5) can result in SAL from the cleavage of the A-ring and rearrangement of the double bond. However, since we observed no SAL in the pyrograms of tricin-enriched extracts, tricin can be ruled out as potential (interfering) source of acetaldehyde products. If indeed acetaldehyde products originated from cleavage products of the inter-unit linkages, rather than intact oxidized β-O-4 linkages, they should be subtracted from the PhCγ products for a more fair representation of the intact inter-unit linkages (PhCγ-acetaldehyde in Table 1). Our results, thus, indicate that fungal-treated lignin was considerably reduced in intact inter-unit linkages, in particular for Cs strains (− 30% compared to control). As Cα-oxidized products greatly accumulated, this reduction in intact inter-unit linkages was likely caused by oxidative cleavage.
Semi-quantitative py-GC–MS confirmed that the observed structures were a direct effect of lignin degradation, i.e., that they accumulated during fungal growth as lignin degradation proceeded (Additional file 6: Figure S3). Intriguingly, though Cs and Le followed a highly similar pattern of lignin degradation in time (Fig. 2), they vastly differed in the remaining lignin structures after their growth. To further substantiate these findings, we also assessed the residual lignin structures by whole cell wall 2D-NMR.
Sample preparation for in situ whole cell wall gel state 2D-NMR requires finely divided, planetary ball-milled samples. Planetary ball milling is associated with structural changes in lignin, mainly with regard to the cleavage of β-O-4 inter-unit linkages . 13C-IS py-GC–MS analysis of the ball-milled samples showed that the milling did not induce structural changes in the lignin present and that the inter-unit linkages remained unaffected (PhCγ constant). Thus, 2D-NMR could be appropriately used.
Semi-quantitative HSQC NMR structural characterization of residual lignin in control and fungal-treated wheat straw after 7 weeks of growth
Lignin subunits (%)a
Lignin inter-unit linkages (%)c
β-O-4′ Aryl ethers
Similar to 13C-IS py-GC–MS (Table 1), 2D-NMR showed minor changes in H:G:S composition after fungal treatment (Table 2). For instance, the H:G:S composition changed from 2:54:44 in control to 3:61:38 in Cs1-treated straw. Again, a (slight) preferential removal of S units was observed, thereby confirming our previous findings by py-GC–MS. However, for a fair comparison of the H:G:S composition found by the two techniques, it should be considered that whereas the hydroxycinnamic acids (p–CA and FA) and tricin (T) can be distinguished from ‘core–lignin’ substructures in 2D-NMR, in py-GC–MS, they result in similar pyrolysis products. Upon pyrolysis, both p-CA and FA as well as inter-unit linkages result in the formation of 4-vinylphenol and 4-vinylguaiacol, respectively. Analogously, tricin is expected to result in S unit derivatives upon pyrolysis.
To enable a comparison of both techniques in terms of H:G:S composition (mol based), pCA (H), FA (G) and T (S) were included in the determination of the subunit composition by NMR (Table 2, numbers in parentheses). Besides analytical comparability, the obtained subunit composition is, in our opinion, more representative of ‘true lignin’ as these substructures were shown to be an integral part of lignin [17, 65]. Upon inclusion of these substructures, the obtained subunit compositions found by both techniques matched better, though they remained different [Cs1 H:G:S (NMR) = 5:59:35, H:G:S (py-GC–MS) = 12:62:26]. It cannot be expected that both techniques result in identical values, as different entities are measured . Still, because similar trends were observed, complementary structural information can be obtained by comparing both techniques. One of the explanations for the observed difference is that the semi-quantitative nature of the NMR technique results in overestimation of end-units as a result of differences in relaxation behavior compared to ‘core–lignin’ . Another explanation is that hydroxycinnamic acids are pyrolyzed more efficiently compared to ‘core–lignin’, which results in overestimation of their abundances and contributions to lignin .
The most pronounced change observed by NMR was the increase in Cα-oxidized aromatic units in fungal-treated samples, with a threefold accumulation in Cs treated lignin (up to 19–24% of total aromatic units; Table 2). This increase coincides with the increase in Cα-oxidized products in py-GC–MS and these compounds, hence, were mostly derived from Cα-oxidized units initially present in the polymer. Even relative abundances (% mol) of Cα-oxidized substructures obtained by both techniques were in fairly good accordance [Cs1 Cα-ox (NMR) = 15%, Cα-ox (py-GC–MS) = 14%]. It can be assumed that the Cα-oxidized substructures accumulated in fungal-treated lignin due to the fact that, once oxidized, these units cannot be further oxidized (by the respective fungal oxidases present) and are, therefore, resistant to further degradation and further metabolization. Cα-oxidized S units appeared more prone to accumulate than their Cα-oxidized G unit counterparts (Sox/S > Gox/G) for all fungi. This might on the one hand be explained by their ease of formation, as discussed in the previous section. On the other hand, S units might be more difficult to be consumed and fully metabolized.
Interestingly, while the Cα-oxidized aromatic units clearly increased, no apparent increase in Cα-oxidized (α-keto) β-O-4′ substructures could be observed. The latter observation shows that the Cα-oxidized signals mainly originated from cleaved linkages, and simultaneously highlights the importance of corresponding VAL and SAL compounds in the py-GC–MS analysis. The suggestion that cleaved linkages accumulated in the residual lignin is further substantiated by the reduced amounts of intact inter-unit linkages in fungal-treated lignin. Intact inter-unit linkages were severely reduced by Cs treatment (Cs1–20%, Cs12–34%; Table 2), which was also observed by py-GC–MS. The abundance of the pyrolysis PhCγ products excluding acetaldehydes, thus, seems to be a highly valuable parameter for the investigation of intact β-O-4-linkages in the lignin structure by py-GC–MS.
The previous studies also reported on the reduction of inter-unit linkages in Cs treated lignin [60, 66]. However, these studies were conducted on wood, of which the lignin is of a different structure. Still, in these biomasses, the β-O-4 inter-unit linkage is most abundant and, therefore, can be used to compare fungal action. Guerra et al. found that Cs treated pine was preferentially reduced in β-O-4 linkages, while carbon–carbon linked units were more resistant against fungal degradation . Our results indicated that all inter-unit linkages in wheat straw lignin were comparable in their susceptibility towards fungal degradation as their relative composition was rather stable (< 10% different from control; Table 2).
Another clear result from the 2D-NMR analysis was the reduction in FA moieties after fungal treatment, particularly by the Pe strains (around 30% reduction; Table 2). Possibly, the lignin–carbohydrate linkages in which FA participates were targeted in a more preferential manner [17, 67]. Though, the specific removal of glucuronoarabinoxylan (GAX) linked ferulates and crosslinked diferulates cannot be excluded. Such structures could be cleaved by feruloyl esterases, which have been shown to occur extracellularly for Pe and Le .
The specific targeting of FA moieties is in line with the concurrent lignin and GAX degradation during fungal growth. The magnitudes of FA and GAX removal were, however, not directly linked (Fig. 3, Additional file 4: Figure S1). In contrast to FA, pCA moieties were not preferentially removed.
Tricin was surprisingly shown to be specifically targeted during fungal growth, in particular by Pe strains (− 40% vs total lignin; Table 2). Tricin has recently been suggested to play an important role in the biosynthesis of lignin in poaceous crops by functioning as a nucleation site for lignin formation [15, 18, 19, 65]. The preferential removal of tricin suggests that, besides lignin formation, tricin may play a crucial role in the fungal degradation of lignin as well.
Mechanistic insight in fungal delignification by combining results of 13C-IS py-GC–MS and 2D-NMR
The combination of 2D-NMR and 13C-IS py-GC–MS analysis provided more insight into the reaction mechanisms underlying delignification by the studied fungi, in particular for the Cs strains. The absence of Cα-oxidized (α-keto) β-O-4′ substructures in 2D-NMR combined with decreased amounts of intact inter-unit linkages (both techniques) confirmed that the Cα-oxidized substructures were present in the fungal-treated lignin macromolecule as cleavage products of the inter-unit linkages. Upon pyrolysis, these cleavage products resulted in the formation of the acetaldehydes VAL and SAL. Since these pyrolysis products contain an intact α, β, and γ carbon side chain, the structures that they originate from should contain this three-carbon side chain as well. Hence, we postulate that acetaldehyde pyrolysis products originated from the remaining structures after Cβ–O cleavage of the β-O-4′ ether.
Cα-oxidized pyrolysis products with an α-carbon side-chain, like vanillin and syringaldehyde, were likewise, but not specifically, formed from cleavage products and thus are suggested to be the result of Cα–Cβ cleavage.
Ceriporiopsis subvermispora (Cs) and Lentinula edodes (Le) are more effective and selective wheat straw lignin degrading fungi than Pleurotus eryngii (Pe). They degraded more than 60% (w/w) of lignin without extensive carbohydrate degradation within 7 weeks of treatment. Though Cs and Le followed a similar pattern of lignin degradation in time, the structural features of residual lignin as determined by quantitative 13C-IS py-GC–MS and in situ HSQC NMR were vastly different. Both techniques revealed that Cs treated lignin was exceptionally high in Cα-oxidized substructures (up to 24% of aromatic units) and a factor two higher than Le-treated lignin. Le and Pe, on the other hand, more specifically targeted ferulic acid substructures, while Pe preferentially removed tricin up to 40% more than other substructures. Furthermore, Cs delignification mainly proceeded via Cβ–O–aryl and Cα–Cβ cleavage of the lignin inter-unit linkages, while inter-unit degradation by Le and Pe seemed dominated by Cα–Cβ cleavage with Cβ–O–aryl cleavage occurring to lesser extents. We, therefore, suggest that the underlying delignification mechanisms of these fungi are fundamentally different.
Besides assisting the further optimization of fungal pretreatment of plant biomass, we highlight that the choice of fungus impacts the structure of residual lignin and results in lignin with remarkable structure. Thus, fungal pretreatment not only enhances the degradability of plant cell wall polysaccharides, but also results in an interesting lignin fraction that can be exploited to further increase the sustainability of the process.
GE, NN, AS, JC, WH, and MK designed research; GE and NN performed research and analyzed data; and GE, NN, AS, JC, WH, and MK wrote the paper. All authors read and approved the final manuscript.
The authors gratefully acknowledge the financial support from the University Fund Wageningen (UFW) as part of the project “More Meat and Milk from Straw” which is sponsored by DEKA, ForFarmers, and the Victam Foundation. The authors acknowledge the scholarship provided by the Ministry of Higher Education of Malaysia and the Universiti Putra Malaysia. All funding bodies had no involvement in planning and conduct of the research. Maud Pfeiffer is acknowledged for formatting NMR spectra.
The authors declare that they have no competing interests.
Availability of supporting data
Consent for publication
Ethical approval and consent to participate
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
- Buranov AU, Mazza G. Lignin in straw of herbaceous crops. Ind Crops Prod. 2008;28:237–59.View ArticleGoogle Scholar
- Isroi, Millati R, Syamsiah S, Niklasson C, Cahyanto MN, Ludquist K, et al. Biological pretreatment of lignocelluloses with white-rot fungi and its applications: a review. BioResources. 2011;6:5224–59.Google Scholar
- Isikgor FH, Becer CR. Lignocellulosic biomass: a sustainable platform for the production of bio-based chemicals and polymers. Polym Chem. 2015;6:4497–559.View ArticleGoogle Scholar
- Ćilerdžić J, Galić M, Vukojević J, Brčeski I, Stajić M. Potential of selected fungal species to degrade wheat straw, the most abundant plant raw material in Europe. BMC Plant Biol. 2017;17(2):249.View ArticleGoogle Scholar
- Behera S, Arora R, Nandhagopal N, Kumar S. Importance of chemical pretreatment for bioconversion of lignocellulosic biomass. Renew Sustainable Energy Rev. 2014;36:91–106.View ArticleGoogle Scholar
- Tian X, Fang Z, Guo F. Impact and prospective of fungal pre-treatment of lignocellulosic biomass for enzymatic hydrolysis. Biofuels Bioprod Biorefin. 2012;6:335–50.View ArticleGoogle Scholar
- Sindhu R, Binod P, Pandey A. Biological pretreatment of lignocellulosic biomass—an overview. Bioresour Technol. 2016;199:76–82.View ArticleGoogle Scholar
- Keller FA, Hamilton JE, Nguyen QA. Microbial pretreatment of biomass. Appl Biochem Biotechnol. 2003;105:27–41.View ArticleGoogle Scholar
- Van Kuijk SJA, Sonnenberg ASM, Baars JJP, Hendriks WH, Cone JW. Fungal treated lignocellulosic biomass as ruminant feed ingredient: a review. Biotechnol Adv. 2015;33:191–202.View ArticleGoogle Scholar
- Tuyen V, Cone J, Baars J, Sonnenberg A, Hendriks W. Fungal strain and incubation period affect chemical composition and nutrient availability of wheat straw for rumen fermentation. Bioresour Technol. 2012;111:336–42.View ArticleGoogle Scholar
- van Kuijk SJA, Sonnenberg ASM, Baars JJP, Hendriks WH, Cone JW. Fungal treatment of lignocellulosic biomass: importance of fungal species, colonization and time on chemical composition and in vitro rumen degradability. Anim Feed Sci Technol. 2015;209:40–50.View ArticleGoogle Scholar
- van Kuijk SJA, Sonnenberg ASM, Baars JJP, Hendriks WH, Del Río JC, Rencoret J, et al. Chemical changes and increased degradability of wheat straw and oak wood chips treated with the white rot fungi Ceriporiopsis subvermispora and Lentinula edodes. Biomass Bioenergy. 2017;105:381–91.View ArticleGoogle Scholar
- Nayan N, Sonnenberg AS, Hendriks WH, Cone JW. Screening of white-rot fungi for bioprocessing of wheat straw into ruminant feed. J Appl Microbiol. 2018;125:468–79.View ArticleGoogle Scholar
- Vanholme R, Demedts B, Morreel K, Ralph J, Boerjan W. Lignin biosynthesis and structure. Plant Physiol. 2010;153:895–905.View ArticleGoogle Scholar
- Del Río JC, Rencoret J, Prinsen P, Martínez AT, Ralph J, Gutiérrez A. Structural characterization of wheat straw lignin as revealed by analytical pyrolysis, 2D-NMR, and reductive cleavage methods. J Agric Food Chem. 2012;60:5922–35.View ArticleGoogle Scholar
- Ralph J, Brunow G, Harris PJ, Dixon RA, Schatz PF, Boerjan W. Lignification: are lignins biosynthesized via simple combinatorial chemistry or via proteinaceous control and template replication? In: Lattanzio V, Daayf F, editors. Recent advances in polyphenol research, vol. 1. Oxord: Wiley; 2009. p. 36–66.Google Scholar
- Ralph J. Hydroxycinnamates in lignification. Phytochem Rev. 2010;9:65–83.View ArticleGoogle Scholar
- Lan W, Lu F, Regner M, Zhu Y, Rencoret J, Ralph SA, et al. Tricin, a flavonoid monomer in monocot lignification. Plant Physiol. 2015;167:1284–95.View ArticleGoogle Scholar
- Li M, Pu Y, Yoo CG, Ragauskas AJ. The occurrence of tricin and its derivatives in plants. Green Chem. 2016;18:1439–54.View ArticleGoogle Scholar
- Martínez AT, Speranza M, Ruiz-Dueñas FJ, Ferreira P, Camarero S, Guillén F, et al. Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. Int Microbiol. 2005;8:195–204.PubMedGoogle Scholar
- Ten Have R, Teunissen PJ. Oxidative mechanisms involved in lignin degradation by white-rot fungi. Chem Rev. 2001;101:3397–414.View ArticleGoogle Scholar
- Hatakka A, Hammel KE. Fungal biodegradation of lignocelluloses. In: Hofrichter M, editor. Industrial applications the mycota. Berlin: Springer; 2011. p. 319–40.View ArticleGoogle Scholar
- Hernández-Ortega A, Ferreira P, Martínez AT. Fungal aryl-alcohol oxidase: a peroxide-producing flavoenzyme involved in lignin degradation. Appl Microbiol Biotech. 2012;93:1395–410.View ArticleGoogle Scholar
- Camarero S, Martínez MJ, Martínez AT. Understanding lignin biodegradation for the improved utilization of plant biomass in modern biorefineries. Biofuels Bioprod Biorefin. 2014;8:615–25.View ArticleGoogle Scholar
- Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proc Natl Acad Sci. 2012;109:5458–63.View ArticleGoogle Scholar
- Nagai M, Sakamoto Y, Nakade K, Sato T. Isolation and characterization of the gene encoding a manganese peroxidase from Lentinula edodes. Mycoscience. 2007;48:125–30.View ArticleGoogle Scholar
- Sakamoto Y, Nakade K, Sato S, Yoshida K, Miyazaki K, Natsume S, et al. Lentinula edodes genome survey and postharvest transcriptome analysis. Appl Environ Microbiol. 2017;83:e02990–3016.View ArticleGoogle Scholar
- Park S-G, il Yoo S, Ryu DS, Lee H, Ahn YJ, Ryu H, et al. Long-read transcriptome data for improved gene prediction in Lentinula edodes. Data in brief. 2017;15:454–8.View ArticleGoogle Scholar
- Yang R-H, Li Y, Wáng Y, Wan J-N, Zhou C-L, Wāng Y, et al. The genome of Pleurotus eryngii provides insights into the mechanisms of wood decay. J Biotechnol. 2016;239:65–7.View ArticleGoogle Scholar
- Fernández-Fueyo E, Ruiz-Dueñas FJ, Miki Y, Martínez MJ, Hammel KE, Martínez AT. Lignin-degrading peroxidases from genome of selective ligninolytic fungus Ceriporiopsis subvermispora. J Biol Chem. 2012;287:16903–16.View ArticleGoogle Scholar
- Camarero S, Galletti GC, Martinez AT. Preferential degradation of phenolic lignin units by two white rot fungi. Appl Environ Microbiol. 1994;60:4509–16.PubMedPubMed CentralGoogle Scholar
- Crestini C, Sermanni GG, Argyropoulos DS. Structural modifications induced during biodegradation of wheat lignin by Lentinula edodes. Bioorg Med Chem. 1998;6:967–73.View ArticleGoogle Scholar
- Martı́nez A, Camarero S, Gutiérrez A, Bocchini P, Galletti G. Studies on wheat lignin degradation by Pleurotus species using analytical pyrolysis. J Anal Appl Pyrolysis. 2001;58:401–11.View ArticleGoogle Scholar
- Dorado J, Almendros G, Camarero S, Martínez AT, Vares T, Hatakka A. Transformation of wheat straw in the course of solid-state fermentation by four ligninolytic basidiomycetes. Enzyme Microb Technol. 1999;25:605–12.View ArticleGoogle Scholar
- Jurak E, Punt AM, Arts W, Kabel MA, Gruppen H. Fate of carbohydrates and lignin during composting and mycelium growth of Agaricus bisporus on wheat straw based compost. PLoS ONE. 2015;10:e0138909.View ArticleGoogle Scholar
- van Erven G, de Visser R, Merkx DW, Strolenberg W, De Gijsel P, Gruppen H, et al. Quantification of lignin and its structural features in plant biomass using 13C lignin as internal standard for pyrolysis-GC–SIM–MS. Anal Chem. 2017;89:10907–16.View ArticleGoogle Scholar
- Kim H, Ralph J, Akiyama T. Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d 6. BioEnergy Res. 2008;1:56–66.View ArticleGoogle Scholar
- Mansfield SD, Kim H, Lu F, Ralph J. Whole plant cell wall characterization using solution-state 2D NMR. Nat Protoc. 2012;7:1579.View ArticleGoogle Scholar
- Björkman A. Studies on finely divided wood. Part 1. Extraction of lignin with neutral solvents. Sven Papperstidn. 1956;59:477–85.Google Scholar
- Chang HM, Cowling EB, Brown EB. Comparative studies on cellulolytic enzyme lignin and milled wood lignin of sweetgum and spruce. Holzforschung. 1975;29:153–9.View ArticleGoogle Scholar
- Kirk TK, Chang HM. Decomposition of lignin by white-rot fungi. I. Isolation of heavily degraded lignins from decayed spruce. Holzforschung. 1974;28:217–22.View ArticleGoogle Scholar
- Nayan N, Sonnenberg ASM, Hendriks WH, Cone JW. Differences between two strains of Ceriporiopsis subvermispora on improving the nutritive value of wheat straw for ruminants. J Appl Microbiol. 2017;123:352–61.View ArticleGoogle Scholar
- Knudsen KEB. Fiber and nonstarch polysaccharide content and variation in common crops used in broiler diets. Poult Sci. 2014;93(9):2380–93.View ArticleGoogle Scholar
- van Kuijk SJ, Sonnenberg AS, Baars JJ, Hendriks WH, Cone JW. The effect of particle size and amount of inoculum on fungal treatment of wheat straw and wood chips. J Anim Sci Biotechnol. 2016;7(1):39.View ArticleGoogle Scholar
- Englyst HN, Cummings JH. Simplified method for the measurement of total non-starch polysaccharides by gas–liquid chromatography of constituent sugars as alditol acetates. Analyst. 1984;109:937–42.View ArticleGoogle Scholar
- Blumenkrantz N, Asboe-Hansen G. New method for quantitative determination of uronic acids. Anal Biochem. 1973;54:484–9.View ArticleGoogle Scholar
- Ralph J, Hatfield RD. Pyrolysis-GC–MS characterization of forage materials. J Agric Food Chem. 1991;39:1426–37.View ArticleGoogle Scholar
- Yuan T-Q, Sun S-N, Xu F, Sun R-C. Characterization of lignin structures and lignin–carbohydrate complex (LCC) linkages by quantitative 13C and 2D HSQC NMR spectroscopy. J Agric Food Chem. 2011;59:10604–14.View ArticleGoogle Scholar
- Ralph SA, Ralph J, Landucci L. NMR database of lignin and cell wall model compounds. 2009. www.glbrc.org/databases_and_software/nmrdatabase/.
- Rencoret J, Gutiérrez A, Nieto L, Jiménez-Barbero J, Faulds CB, Kim H, et al. Lignin composition and structure in young versus adult Eucalyptus globulus plants. Plant Physiol. 2011;155:110.View ArticleGoogle Scholar
- Rencoret J, Pereira A, del Río JC, Martínez ÁT, Gutiérrez A. Delignification and saccharification enhancement of sugarcane byproducts by a laccase-based pretreatment. ACS Sustainable Chem Eng. 2017;5:7145–54.View ArticleGoogle Scholar
- Del Río JC, Lino AG, Colodette JL, Lima CF, Gutiérrez A, Martínez ÁT, et al. Differences in the chemical structure of the lignins from sugarcane bagasse and straw. Biomass Bioenergy. 2015;81:322–38.View ArticleGoogle Scholar
- Villaverde JJ, Li J, Ek M, Ligero P, de Vega A. Native lignin structure of Miscanthus x giganteus and its changes during acetic and formic acid fractionation. J Agric Food Chem. 2009;57:6262–70.View ArticleGoogle Scholar
- Das A, Rahimi A, Ulbrich A, Alherech M, Motagamwala AH, Bhalla A, et al. Lignin conversion to low-molecular-weight aromatics via an aerobic oxidation-hydrolysis sequence: comparison of different lignin sources. ACS Sustainable Chem Eng. 2018;6:3367–74.View ArticleGoogle Scholar
- Kim H, Padmakshan D, Li Y, Rencoret J, Hatfield RD, Ralph J. Characterization and elimination of undesirable protein residues in plant cell wall materials for enhancing lignin analysis by solution-state nuclear magnetic resonance spectroscopy. Biomacromol. 2017;18(12):4184–95.View ArticleGoogle Scholar
- Sette M, Wechselberger R, Crestini C. Elucidation of lignin structure by quantitative 2D NMR. Chem Eur J. 2011;17:9529–35.View ArticleGoogle Scholar
- Wen J-L, Sun S-L, Xue B-L, Sun R-C. Recent advances in characterization of lignin polymer by solution-state nuclear magnetic resonance (NMR) methodology. Materials. 2013;6:359–91.View ArticleGoogle Scholar
- van Kuijk SJ, José C, Rencoret J, Gutiérrez A, Sonnenberg AS, Baars JJ, et al. Selective ligninolysis of wheat straw and wood chips by the white-rot fungus Lentinula edodes and its influence on in vitro rumen degradability. J Anim Sci Biotechnol. 2016;7:55.View ArticleGoogle Scholar
- Del Río J, Speranza M, Gutiérrez A, Martínez M, Martínez A. Lignin attack during eucalypt wood decay by selected basidiomycetes: a Py-GC/MS study. J Anal Appl Pyrolysis. 2002;64:421–31.View ArticleGoogle Scholar
- Choi J, Choi D, Ahn S, Lee S, Kim M, Meier D, et al. Characterization of trembling aspen wood (Populus tremuloides L.) degraded with the white rot fungus Ceriporiopsis subvermispora and MWLs isolated thereof. Holz Roh Werkst. 2006;64:415–22.View ArticleGoogle Scholar
- Patwardhan PR, Brown RC, Shanks BH. Understanding the fast pyrolysis of lignin. Chemsuschem. 2011;4:1629–36.View ArticleGoogle Scholar
- Zeng J, Helms GL, Gao X, Chen S. Quantification of wheat straw lignin structure by comprehensive NMR analysis. J Agric Food Chem. 2013;61:10848–57.View ArticleGoogle Scholar
- Fujimoto A, Matsumoto Y, Chang H-M, Meshitsuka G. Quantitative evaluation of milling effects on lignin structure during the isolation process of milled wood lignin. J Wood Sci. 2005;51:89–91.View ArticleGoogle Scholar
- Rencoret J, Pereira A, José C, Martínez AT, Gutiérrez A. Laccase-mediator pretreatment of wheat straw degrades lignin and improves saccharification. BioEnergy Res. 2016;9:917–30.View ArticleGoogle Scholar
- Lan W, Rencoret J, Lu F, Karlen SD, Smith BG, Harris PJ, et al. Tricin-lignins: occurrence and quantitation of tricin in relation to phylogeny. Plant J. 2016;88:1046–57.View ArticleGoogle Scholar
- Guerra A, Mendonça R, Ferraz A, Lu F, Ralph J. Structural characterization of lignin during Pinus taeda wood treatment with Ceriporiopsis subvermispora. Appl Environ Microbiol. 2004;70:4073–8.View ArticleGoogle Scholar
- Hatfield RD, Rancour DM, Marita JM. Grass cell walls: a story of cross-linking. Front Plant Sci. 2017;7:2056.View ArticleGoogle Scholar
- Haase-Aschoff P, Linke D, Berger RG. Detection of feruloyl-and cinnamoyl esterases from basidiomycetes in the presence of interfering laccase. Bioresour Technol. 2013;130:231–8.View ArticleGoogle Scholar
- Crestini C, Jurasek L, Argyropoulos DS. On the mechanism of the laccase–mediator system in the oxidation of lignin. Chem Eur J. 2003;9:5371–8.View ArticleGoogle Scholar
- Jensen KA, Bao W, Kawai S, Srebotnik E, Hammel KE. Manganese-dependent cleavage of nonphenolic lignin structures by Ceriporiopsis subvermispora in the absence of lignin peroxidase. Appl Environ Microbiol. 1996;62:3679–86.PubMedPubMed CentralGoogle Scholar
- Bao W, Fukushima Y, Jensen KA Jr, Moen MA, Hammel KE. Oxidative degradation of non-phenolic lignin during lipid peroxidation by fungal manganese peroxidase. FEBS Lett. 1994;354:297–300.View ArticleGoogle Scholar
- Gutiérrez A, José C, Martínez-Íñigo MJ, Martínez MJ, Martínez ÁT. Production of new unsaturated lipids during wood decay by ligninolytic basidiomycetes. Appl Environ Microbiol. 2002;68:1344–50.View ArticleGoogle Scholar
- Martínez MJ, Barrasa JM, Gutiérrez A, Carlos del Río J, Martínez AT. Fungal screening for biological removal of extractives from Eucalyptus globulus wood. Can J Bot. 2000;77:1513–22.View ArticleGoogle Scholar
- Nishimura H, Sasaki M, Seike H, Nakamura M, Watanabe T. Alkadienyl and alkenyl itaconic acids (ceriporic acids G and H) from the selective white-rot fungus Ceriporiopsis subvermispora: a new class of metabolites initiating ligninolytic lipid peroxidation. Org Biomol Chem. 2012;10:6432–42.View ArticleGoogle Scholar
- Srebotnik E, Jensen K, Kawai S, Hammel KE. Evidence that Ceriporiopsis subvermispora degrades nonphenolic lignin structures by a one-electron-oxidation mechanism. Appl Environ Microbiol. 1997;63:4435–40.PubMedPubMed CentralGoogle Scholar
- Yelle DJ, Kapich AN, Houtman CJ, Lu F, Timokhin VI, Fort RC, et al. A highly diastereoselective oxidant contributes to ligninolysis by the white rot basidiomycete Ceriporiopsis subvermispora. Appl Environ Microbiol. 2014;80:7536–44.View ArticleGoogle Scholar
- Kawai S, Nakagawa M, Ohashi H. Degradation mechanisms of a nonphenolic β-O-4 lignin model dimer by Trametes versicolor laccase in the presence of 1-hydroxybenzotriazole. Enzyme Microb Technol. 2002;30:482–9.View ArticleGoogle Scholar
- Cantarella G, Galli C, Gentili P. Free radical versus electron-transfer routes of oxidation of hydrocarbons by laccase/mediator systems: catalytic or stoichiometric procedures. J Mol Catal B Enzym. 2003;22:135–44.View ArticleGoogle Scholar