Genome-wide association study and transcriptome analysis reveal key genes affecting root growth dynamics in rapeseed

Table 2 Key persistent candidate genes identified by GWAS, WGCNA, and differential expression analysis

Gene ID	Cluster	Distance to peak SNP (Kb)	Type1_10DAT	Type1_3EL	Type1_5EL	Type1_7EL	Type2_10DAT	Type2_3EL	Type2_5EL	Type2_7EL	Gene_symbol	Description
Purple
BnaA05g11320D^b	S7	342.28	4.43	1.89	3.13	3.72	1.89	1.64	1.64	1.48	PCMP-E75	Pentatricopeptide repeat-containing protein
BnaA10g24040D^b	S17	236.56	4.53	5.54	5.48	4.13	3.50	3.14	3.54	1.15	–	–
Green
BnaA05g03210D^a	#9	35.9	9.80	4.22	6.64	5.89	26.85	52.49	36.34	36.96	EPSIN2	Clathrin interactor EPSIN 2
BnaC02g10480D^a	S20	50.6	1.80	0.78	0.15	0.56	16.07	42.07	16.13	31.31	SBT4.8	Subtilisin-like serine endopeptidase family protein
BnaC02g10710D^a	S20	157.3	0.07	0.23	0.27	0.27	4.07	5.84	3.18	3.94	RID1	ROOT INITIATION DEFECTIVE 1
BnaA02g20510D^b	S1	170.99	8.96	5.62	5.06	5.02	17.57	10.61	11.67	15.96	RSH1	Putative GTP diphosphokinase RSH1
BnaA03g52990D^b	#4	69.3	3.36	7.90	0.89	2.10	11.78	14.47	9.05	12.04	GATA3	GATA transcription factor 3 (GATA3)
BnaC08g35330D^b	#21	168.29	206.76	116.64	58.63	134.22	332.26	443.97	227.90	382.19	–	–
BnaC08g39040D^b	S26	6.28	7.63	5.94	5.02	8.72	18.90	22.82	17.99	14.99	PSS1	CDP-diacylglycerol-serine O-phosphatidyltransferase 1

ISSN: 2731-3654