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Table 2 Key persistent candidate genes identified by GWAS, WGCNA, and differential expression analysis

From: Genome-wide association study and transcriptome analysis reveal key genes affecting root growth dynamics in rapeseed

Gene ID Cluster Distance to peak SNP (Kb) Type1_10DAT Type1_3EL Type1_5EL Type1_7EL Type2_10DAT Type2_3EL Type2_5EL Type2_7EL Gene_symbol Description
Purple
 BnaA05g11320Db S7 342.28 4.43 1.89 3.13 3.72 1.89 1.64 1.64 1.48 PCMP-E75 Pentatricopeptide repeat-containing protein
 BnaA10g24040Db S17 236.56 4.53 5.54 5.48 4.13 3.50 3.14 3.54 1.15
Green
 BnaA05g03210Da #9 35.9 9.80 4.22 6.64 5.89 26.85 52.49 36.34 36.96 EPSIN2 Clathrin interactor EPSIN 2
 BnaC02g10480Da S20 50.6 1.80 0.78 0.15 0.56 16.07 42.07 16.13 31.31 SBT4.8 Subtilisin-like serine endopeptidase family protein
 BnaC02g10710Da S20 157.3 0.07 0.23 0.27 0.27 4.07 5.84 3.18 3.94 RID1 ROOT INITIATION DEFECTIVE 1
 BnaA02g20510Db S1 170.99 8.96 5.62 5.06 5.02 17.57 10.61 11.67 15.96 RSH1 Putative GTP diphosphokinase RSH1
 BnaA03g52990Db #4 69.3 3.36 7.90 0.89 2.10 11.78 14.47 9.05 12.04 GATA3 GATA transcription factor 3 (GATA3)
 BnaC08g35330Db #21 168.29 206.76 116.64 58.63 134.22 332.26 443.97 227.90 382.19
 BnaC08g39040Db S26 6.28 7.63 5.94 5.02 8.72 18.90 22.82 17.99 14.99 PSS1 CDP-diacylglycerol-serine O-phosphatidyltransferase 1
  1. aCandidate genes overlapped by WGCNA, GWAS and DEGs
  2. bCandidate genes overlapped by WGCNA and GWAS