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Table 2 Strains and plasmids used in this study

From: Identification and combinatorial engineering of indole-3-acetic acid synthetic pathways in Paenibacillus polymyxa

Strains or plasmids

Genotype/properties

Source/references

Strain

 E. coli DH5α

F-φ80 lac ZΔM15 Δ(lacZYA-arg F) U169 endA1 recA1 hsdR17(rk −, mk +) supE44λ- thi-1 gyrA96 relA1 phoA

TransGen Biotech

 CQDH5α-Qiu

E. coli DH5α derivative; {pHY300PLK-gfp-cm-ter}

[60]

 CQDH5α-promotera

E. coli DH5α derivative; {pHY300PLK-Promoter-gfp-cm-ter}

This work

 CQDH5α-amyb

E. coli DH5α derivative; {pHY300PLK-P04420/P04420-4/P04420-6/P04420-8/P04420-9-α-amylase-ter}

This work

 DH5α-patA

DH5α derivative; {pHY300PLK-P04420-patA}

This work

 DH5α-ilvB

DH5α derivative; {pHY300PLK-P04420-ilvB3}

This work

 DH5α-fusE

DH5α derivative; {pHY300PLK-P04420-fusE}

This work

 DH5α-C

DH5α derivative; {pHY300PLK-P04420-patA-ilvB3-fusE}

This work

 DH5α-Pgap-IAM

DH5α derivative; {pHY300PLK-Pgap-iaam}

This work

 DH5α-P04420-IAM

DH5α derivative; {pHY300PLK-P04420-iaam}

This work

 DH5α-Pgap-IPyAAKA

DH5α derivative; {pHY300PLK-Pgap-aro8-kdc-aldH}

This work

 DH5α-P04420-IPyAAKA

DH5α derivative; {pHY300PLK-P04420-aro8-kdc-aldH}

This work

 DH5α-P04420-IPyAJP6

DH5α derivative; {pHY300PLK-P04420-ELJP6_14505-ipdC-ELJP6_00725}

This work

 B. subtilis 168

trpC2

BGSC, [60]

 CQ168-Qiu

B. subtilis 168 derivative; {pHY300PLK-gfp-cm-ter}

[60]

 CQ168-promoterc

B. subtilis 168 derivative; {pHY300PLK-Promoter-gfp-cm-ter}

This work

 P. polymyxa SC2

Wild type, isolated from the rhizosphere of pepper plants in Guizhou, China

[66]

 P. polymyxa SC2-M1

Spontaneous mutant of P. polymyxa SC2

[68]

 CQM1-Qiu

P. polymyxa SC2-M1 derivative; {pHY300PLK-gfp-cm-ter}

[60]

 CQM1-Promoterd

P. polymyxa SC2-M1 derivative; {pHY300PLK-Promoter-gfp-cm-ter}

This work

 CQM1-amye

P. polymyxa SC2-M1 derivative; {pHY300PLK-P04420/P04420-4/P04420-6/P04420-8/P04420-9-α-amylase-ter}

This work

 SC2-M1-P

SC2-M1derivative; {pHY300PLK}

This work

 M1-patA

SC2-M1derivative; {pHY300PLK-P04420-patA}

This work

 M1-ilvB

SC2-M1derivative; {pHY300PLK-P04420-ilvB3}

This work

 M1-fusE

SC2-M1derivative; {pHY300PLK-P04420-fusE}

This work

 M1-C1

SC2-M1 derivative; {pHY300PLK-P04420-patA–ilvB3–fusE}

This work

 M1-Pgap-IAM

SC2-M1 derivative; {pHY300PLK-Pgap-iaam}

This work

 M1-P04420-IAM

SC2-M1 derivative; {pHY300PLK-P04420-iaam}

This work

 M1-Pgap-IPyAAKA

SC2-M1 derivative; {pHY300PLK-Pgap-aro8-kdc-aldH}

This work

 M1-P04420-IPyAAKA

SC2-M1 derivative; {pHY300PLK-P04420-aro8-kdc-aldH}

This work

 M1-P04420-IPyAJP6

SC2-M1 derivative; {pHY300PLK-P04420-ELJP6_14505-ipdC-ELJP6_00725}

This work

Plasmid

 pHY300PLK

E. coli and B. subtilis shuttle vector; Ampr, Tetr

TaKaRa

 pHY300PLK-gfp-cm

pHY300PLK-gfp-cm-ter

[60]

 pHY300PLK-Promoterf-gfp-cm

pHY300PLK-Promoter-gfp-cm-ter

This work

 pHY300PLK-Promoterg-amylase

pHY300PLK-P04420/P04420-4/P04420-6/P04420-8/P04420-9-α-amylase-ter

This work

 pHY300PLK-Pgap

pHY300PLK-Pgap

[60]

 pHY300PLK-P04420

pHY300PLK-P04420

This work

 pHY300PLK-patA

pHY300PLK-P04420-patA

This work

 pHY300PLK-ilvB3

pHY300PLK-P04420-ilvB3

This work

 pHY300PLK-fusE

pHY300PLK-P04420-fusE

This work

 pHY300PLK-patA-ilvB3-fusE

pHY300PLKK-P04420-patA-ilvB3-fusE

This work

 pHY300PLK-Pgap-IAM

pHY300PLKK-Pgap-iaam

This work

 pHY300PLK-P04420-IAM

pHY300PLK-P04420-iaam

This work

 pHY300PLK-Pgap-IPyAAKA

pHY300PLK-Pgap-aro8-kdc-aldH

This work

 pHY300PLK-P04420-IPyAAKA

pHY300PLK-P04420-aro8-kdc-aldH

This work

 pHY300PLK-P04420-IPyAJP6

pHY300PLK-P04420-ELJP6_14505-ipdC-ELJP6_00725

This work

  1. aThe E. coli DH5α-based strains containing all the promoter fragments in plasmid pHY300PLK-gfp-cm in this work
  2. bThe E. coli DH5α-based strains expressing α-amylase by promoter P04420 and its derivatives in this work
  3. cThe B. subtilis 168-based strains containing all the promoter fragments in plasmid pHY300PLK-gfp-cm in this work
  4. dThe P. polymyxa SC2-M1-based strains containing all the promoter fragments in plasmid pHY300PLK-gfp-cm in this work
  5. eThe P. polymyxa SC2-M1-based strains expressing α-amylase by promoter P04420 and its derivatives in this work
  6. fContaining all the promoter fragments in this work
  7. gContaining promoter fragments of P04420 and its derivatives in this work