Dale BE, Ong RG. Energy, wealth, and human development: why and how biomass pretreatment research must improve. Biotechnol Prog [Internet]. 2012;28:893–8. doi:10.1002/btpr.1575.
Article
CAS
Google Scholar
Lynd LR, Laser MS, Bransby D, Dale BE, Davison B, Hamilton R, et al. How biotech can transform biofuels. Nat Biotechnol [Internet]. 2008;26:169–72.
Article
CAS
Google Scholar
Chundawat SPS, Vismeh R, Sharma LN, Humpula JF, da Costa Sousa L, Chambliss CK, et al. Multifaceted characterization of cell wall decomposition products formed during Ammonia Fiber Expansion (AFEX) and dilute acid based pretreatments. Bioresour Technol [Internet]. 2010;101:8429–38. doi:10.1016/j.biortech.2010.06.027.
Article
CAS
Google Scholar
Chundawat SPS, Donohoe BS, da Costa Sousa L, Elder T, Agarwal UP, Lu F, et al. Multi-scale visualization and characterization of lignocellulosic plant cell wall deconstruction during thermochemical pretreatment. Energy Environ Sci [Internet]. 2011;4:973.
Article
CAS
Google Scholar
Zacchi G. Axelsson a. Economic evaluation of preconcentration in production of ethanol from dilute sugar solutions. Biotechnol Bioeng. 1989;34:223–33.
Article
CAS
Google Scholar
Brodeur G, Yau E, Badal K, Collier J, Ramachandran KB, Ramakrishnan S. Chemical and physicochemical pretreatment of lignocellulosic biomass: a review. Enzyme Res. 2011;2011:787532.
Article
Google Scholar
Garlock RJ, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, et al. Comparative material balances around pretreatment technologies for the conversion of switchgrass to soluble sugars. Bioresour Technol [Internet]. 2011;102:11063–71.
Article
CAS
Google Scholar
da Costa Sousa L, Chundawat SP, Balan V, Dale BE. “Cradle-to-grave” assessment of existing lignocellulose pretreatment technologies. Curr Opin Biotechnol. 2009;20:339–47.
Article
Google Scholar
Uppugundla N, da Costa Sousa L, Chundawat SP, Yu X, Simmons B, Singh S, et al. A comparative study of ethanol production using dilute acid, ionic liquid and AFEX™ pretreated corn stover. Biotechnol Biofuels [Internet]. 2014;7:72.
Article
Google Scholar
Campbell TJ, Teymouri F, Bals B, Glassbrook J, Nielson CD, Videto J. A packed bed Ammonia Fiber Expansion reactor system for pretreatment of agricultural residues at regional depots. Biofuels [Internet]. 2013;4:23–34.
Article
CAS
Google Scholar
Campbell TJ, Teymouri F, Jones DK. Method of separating components from a gas stream. 2013.
Venkatesh B, E Dale B, Chundawat SPS, da Costa Sousa L. Methods for pretreating biomass. US; 2011.
Balan V, Bals B, Chundawat SPS, Marshall D, Dale BE. Lignocellulosic Biomass Pretreatment Using AFEX. In: Mielenz JR, editor. Biofuels Methods Protoc. Methods Mol. Biol. [Internet]. Totowa: Humana Press; 2009. p. 61–77. http://www.springerlink.com/index/10.1007/978-1-60761-214-8_5.
Kazi FK, Fortman JA, Anex RP, Hsu DD, Aden A, Dutta A, et al. Techno-economic comparison of process technologies for biochemical ethanol production from corn stover. Fuel [Internet]. 2010;89:S20–8. doi:10.1016/j.fuel.2010.01.001.
Article
CAS
Google Scholar
Lau MW, Dale BE. Cellulosic ethanol production from AFEX-treated corn stover using Saccharomyces cerevisiae 424A (LNH-ST). Proc Natl Acad Sci. 2009;106:1368–73.
Article
CAS
Google Scholar
Humbird D, Davis R, Tao L, Kinchin C, Hsu D, Aden A, et al. Process design and economics for biochemical conversion of lignocellulosic biomass to ethanol. Renew Energy. 2011;303:147.
Google Scholar
Chundawat SPS, Beckham GT, Himmel ME, Dale BE. Deconstruction of lignocellulosic biomass to fuels and chemicals. Annu Rev Chem Biomol Eng. 2011;2:121–45.
Article
CAS
Google Scholar
Sousa LC, Jin M, Chundawat SPS, Bokade V, Tang X, Azarpira A, et al. Next-generation ammonia pretreatment enhances cellulosic biofuel production. Energy Environ Sci. 2016. doi:10.1039/C5EE03051J.
Google Scholar
Xue S, Uppugundla N, Bowman MJ, Cavalier D, Costa Sousa L, Dale E, et al. Sugar loss and enzyme inhibition due to oligosaccharide accumulation during high solids-loading enzymatic hydrolysis. Biotechnol Biofuels. 2015;8:1–14. doi:10.1186/s13068-015-0378-9.
Article
Google Scholar
Gao D, Uppugundla N, Chundawat SP, Yu X, Hermanson S, Gowda K, et al. Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides. Biotechnol Biofuels. 2011;4:5.
Article
CAS
Google Scholar
Gao D, Chundawat SPS, Krishnan C, Balan V, Dale BE. Mixture optimization of six core glycosyl hydrolases for maximizing saccharification of Ammonia Fiber Expansion (AFEX) pretreated corn stover. Bioresour Technol. 2010;101:2770–81.
Article
CAS
Google Scholar
Vismeh R, Humpula JF, Chundawat SPS, Balan V, Dale BE, Jones AD. Profiling of soluble neutral oligosaccharides from treated biomass using solid phase extraction and LC-TOF MS. Carbohydr Polym. 2013;94:791–9.
Article
CAS
Google Scholar
Neumüller KG, Streekstra H, Schols HA, Gruppen H. Synergistic action of enzyme preparations towards recalcitrant corn silage polysaccharides. Biomass Bioenergy. 2014;60:88–97.
Article
Google Scholar
Kormelink FJM, Voragen AGJ. Degradation of different [(glucurono)arabino]xylans by a combination of purified xylan-degrading enzymes. Appl Microbiol Biotechnol. 1993;38:688–95.
Article
CAS
Google Scholar
Kristensen JB, Felby C, Jørgensen H. Yield-determining factors in high-solids enzymatic hydrolysis of lignocellulose. Biotechnol Biofuels. 2009;2:11.
Article
Google Scholar
Pattathil S, Avci U, Baldwin D, Swennes AG, McGill JA, Popper Z, et al. A comprehensive toolkit of plant cell wall glycan-directed monoclonal antibodies. Plant Physiol. 2010;153:514–25.
Article
CAS
Google Scholar
Li M, Pattathil S, Hahn MG, Hodge DB. Identification of features associated with plant cell wall recalcitrance to pretreatment by alkaline hydrogen peroxide in diverse bioenergy feedstocks using glycome profiling. RSC Adv. 2014;4:17282–92.
Article
CAS
Google Scholar
Avci U, Pattathil S, Hahn MG. Immunological approaches to plant cell wall and biomass characterization: immunolocalization of glycan epitopes. Biomass Convers Methods Protoc Methods Mol Biol. 2012;908:73–82. doi:10.1007/978-1-61779-956-3.
CAS
Google Scholar
Pattathil S, Avci U, Miller JS, Hahn MG. Immunological approaches to plant cell wall and biomass characterization: glycome pro filing. Biomass Convers Methods Protoc Methods Mol Biol. 2012;908:61–72. doi:10.1007/978-1-61779-956-3.
CAS
Google Scholar
Ratnaparkhe S, Venkatachalam S, Hahn MG, Pattathil S. Analyses using cell wall glycan-directed monoclonal antibodies reveal xylan-degradation by two microbial glycosyl hydrolases in cell walls from poplar and switchgrass biomass. J Bioremediation Biodegrad. 2013;S4:1–9.
Google Scholar
Pattathil S, Hahn MG, Dale BE, Chundawat SPS. Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEXTM-pre-treated biomass. J Exp Bot. 2015;66(14):4279–94.
Article
CAS
Google Scholar
Shen H, Poovaiah CR, Ziebell A, Tschaplinski TJ, Pattathil S, Gjersing E, et al. Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production. Biotechnol Biofuels. 2013;6:71.
Article
CAS
Google Scholar
DeMartini JD, Pattathil S, Avci U, Szekalski K, Mazumder K, Hahn MG, et al. Application of monoclonal antibodies to investigate plant cell wall deconstruction for biofuels production. Energy Environ Sci. 2011;4:4332–9. doi:10.1039/C1EE02112E.
Article
CAS
Google Scholar
Izquierdo JA, Pattathil S, Guseva A, Hahn MG, Lynd LR. Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellum to utilize hemicellulose and unpretreated plant material. Biotechnol Biofuels. 2014;7:136.
Article
Google Scholar
Gao X, Kumar R, Singh S, Simmons BA, Balan V, Dale BE, et al. Comparison of enzymatic reactivity of corn stover solids prepared by dilute acid, AFEX™, and ionic liquid pretreatments. Biotechnol Biofuels. 2014;7:71.
Article
Google Scholar
Ebringerová A. Structural diversity and application potential of hemicelluloses. Macromol Symp. 2006;232:1–12.
Article
Google Scholar
Shallom D, Shoham Y. Microbial hemicellulases. Curr Opin Microbiol. 2003;6:219–28.
Article
CAS
Google Scholar
Bansal N, Bhalla A, Pattathil S, Adelman SL, Hahn MG, Hodge D, et al. Cell wall-associated transition metals improve alkaline-oxidative pretreatment in diverse hardwoods. Green Chem. 2015;18:1405–15. doi:10.1039/C5GC01748C.
Article
Google Scholar
Sarkar N, Ghosh SK, Bannerjee S, Aikat K. Bioethanol production from agricultural wastes: an overview. Renew Energy. 2012;37:19–27. doi:10.1016/j.renene.2011.06.045.
Article
CAS
Google Scholar
Dale BE, Bals BD, Kim S, Eranki P. Biofuels done right: land efficient animal feeds enable large environmental and energy benefits. Environ Sci Technol. 2010;44:8385–9.
Article
CAS
Google Scholar
Berlin A, Balakshin M, Gilkes N, Kadla J, Maximenko V, Kubo S, et al. Inhibition of cellulase, xylanase and beta-glucosidase activities by softwood lignin preparations. J Biotechnol. 2006;125:198–209.
Article
CAS
Google Scholar
Schmidt D, Schuhmacher F, Geissner A, Seeberger PH, Pfrengle F. Automated synthesis of arabinoxylan-oligosaccharides enables characterization of antibodies that recognize plant cell wall glycans. Chem Eur J. 2015;21:1–6. doi:10.1002/chem.201500065.
Article
Google Scholar
Schmidt D, Schuhmacher F, Geissner A, Seeberger PH, Pfrengle F. Supporting information automated - automated synthesis of arabinoxylan-oligosaccharides enables characterization of antibodies that recognize plant cell wall glycans. Chem Eur J. 2015;21:S1–71. doi:10.1002/chem.201500065.
Article
Google Scholar
Urbanowicz BR, Pena MJ, Ratnaparkhe S, Avci U, Backe J, Steet HF, et al. 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein. Proc Natl Acad Sci. 2012;109:14253–8.
Article
CAS
Google Scholar
Willats WGT, Limberg G, Buchholt HC, Van Alebeek GJ, Benen J, Christensen TMIE, et al. Analysis of pectic epitopes recognised by hybridoma and phage display monoclonal antibodies using defined oligosaccharides, polysaccharides, and enzymatic degradation. Carbohydr Res. 2000;327:309–20.
Article
CAS
Google Scholar
Clausen MH, Willats WGT, Knox JP. Synthetic methyl hexagalacturonate hapten inhibitors of anti-homogalacturonan monoclonal antibodies LM7, JIM5 and JIM7. Carbohydr Res. 2003;338:1797–800.
Article
CAS
Google Scholar
Knox JP, Linstead PJ, King J, Cooper C, Roberts K. Pectin esterification is spatially regulated both within cell walls and between developing tissues of root apices. Planta. 1990;181:512–21.
Article
CAS
Google Scholar
Grün CH, van Vliet SJ, Schiphorst WECM, Bank CMC, Meyer S, van Die I, et al. One-step biotinylation procedure for carbohydrates to study carbohydrate-protein interactions. Anal Biochem. 2006;354:54–63.
Article
Google Scholar
Hames B, Ruiz R, Scarlata C, Sluiter A, Sluiter J, Templeton D. Preparation of Samples for Compositional Analysis Laboratory Analytical Procedure (LAP) Issue Date : 8/06/2008. Natl Renew Energy Lab. 2008;1–9.
Sluiter A, Hames B, Ruiz R, Scarlata C, Sluiter J, Templeton D, et al. Determination of structural carbohydrates and lignin in biomass determination of structural carbohydrates and lignin in biomass. NREL Lab Anal. Proced. (LAP), Tech. report, NREL/TP-510-42618. 2011.